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zgc:77739 zgc:77739 [ Danio rerio (zebrafish) ]

Gene ID: 393870, updated on 27-Mar-2024

Summary

Official Symbol
zgc:77739provided by ZNC
Official Full Name
zgc:77739provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1862
See related
Ensembl:ENSDARG00000017985 AllianceGenome:ZFIN:ZDB-GENE-040426-1862
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human C4orf33 (chromosome 4 open reading frame 33). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See zgc:77739 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (12394197..12397886)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (11707395..11711086)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene clathrin, light chain A Neighboring gene sodium channel and clathrin linker 1 Neighboring gene uncharacterized LOC103911926 Neighboring gene protocadherin 10a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC77739

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0462 protein C4orf33 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200896.1NP_957190.1  UPF0462 protein C4orf33 homolog

    See identical proteins and their annotated locations for NP_957190.1

    Status: PROVISIONAL

    Source sequence(s)
    BC064302
    UniProtKB/Swiss-Prot
    Q6P2T7
    Related
    ENSDARP00000007907.5, ENSDART00000008127.6
    Conserved Domains (1) summary
    cl14783
    Location:56171
    DOMON_like; Domon-like ligand-binding domains

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    12394197..12397886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159803.4XP_005159860.1  UPF0462 protein C4orf33 homolog isoform X1

    See identical proteins and their annotated locations for XP_005159860.1

    UniProtKB/TrEMBL
    A0A8M2B6F7, F1Q6V3
    Related
    ENSDARP00000115436.1, ENSDART00000138622.3
    Conserved Domains (1) summary
    cl14783
    Location:56171
    DOMON_like; Domon-like ligand-binding domains
  2. XM_005159804.4XP_005159861.1  UPF0462 protein C4orf33 homolog isoform X1

    See identical proteins and their annotated locations for XP_005159861.1

    UniProtKB/TrEMBL
    A0A8M2B6F7, F1Q6V3
    Related
    ENSDARP00000145139.1, ENSDART00000184296.1
    Conserved Domains (1) summary
    cl14783
    Location:56171
    DOMON_like; Domon-like ligand-binding domains

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394464.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    52201..55583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)