U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zgc:55733 zgc:55733 [ Danio rerio (zebrafish) ]

Gene ID: 393968, updated on 25-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
zgc:55733provided by ZNC
Official Full Name
zgc:55733provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-791
See related
Ensembl:ENSDARG00000103845 AllianceGenome:ZFIN:ZDB-GENE-040426-791
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
Hnrpc
Summary
Predicted to enable RNA binding activity. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See zgc:55733 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (4088029..4125063, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (3944121..3966557)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene spore coat protein SP96 Neighboring gene NDRG family member 2 Neighboring gene si:ch211-63p21.2 Neighboring gene si:ch211-63p21.1 Neighboring gene uncharacterized LOC101886680

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC55733

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
heterogeneous nuclear ribonucleoproteins C1/C2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200993.1 → NP_957287.1  heterogeneous nuclear ribonucleoproteins C1/C2

    See identical proteins and their annotated locations for NP_957287.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046891
    UniProtKB/TrEMBL
    Q802Y4
    Related
    ENSDARP00000134136.1, ENSDART00000167182.3
    Conserved Domains (1) summary
    cd12603
    Location:25 → 95
    RRM_hnRNPC; RNA recognition motif in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    4088029..4125063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477446.1 → XP_021333121.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X5

    UniProtKB/TrEMBL
    A0A8M9QBR9
    Related
    ENSDARP00000142800.2, ENSDART00000173696.2
    Conserved Domains (1) summary
    cd12603
    Location:15 → 85
    RRM_hnRNPC; RNA recognition motif in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)

  2. XM_021477444.1 → XP_021333119.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q7N2
    Conserved Domains (1) summary
    cd12603
    Location:15 → 85
    RRM_hnRNPC; RNA recognition motif in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)

  3. XM_021477443.1 → XP_021333118.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PNP7
    Conserved Domains (1) summary
    cd12603
    Location:25 → 95
    RRM_hnRNPC; RNA recognition motif in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)

  4. XM_021477441.1 → XP_021333116.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QBR5
    Conserved Domains (2) summary
    COG0724
    Location:17 → 166
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12603
    Location:25 → 95
    RRM_hnRNPC; RNA recognition motif in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)

  5. XM_021477445.1 → XP_021333120.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X4

    UniProtKB/TrEMBL
    A0A8M9QGR2
    Conserved Domains (1) summary
    cd12603
    Location:25 → 95
    RRM_hnRNPC; RNA recognition motif in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)

  6. XM_021477442.1 → XP_021333117.1  heterogeneous nuclear ribonucleoproteins C1/C2 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PNP7
    Conserved Domains (1) summary
    cd12603
    Location:25 → 95
    RRM_hnRNPC; RNA recognition motif in vertebrate heterogeneous nuclear ribonucleoprotein C1/C2 (hnRNP C1/C2)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.