U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ankrd46b ankyrin repeat domain 46b [ Danio rerio (zebrafish) ]

Gene ID: 402888, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
ankrd46bprovided by ZNC
Official Full Name
ankyrin repeat domain 46bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050114-7
See related
Ensembl:ENSDARG00000015780 AllianceGenome:ZFIN:ZDB-GENE-050114-7
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ankrd46; wu:fq41d11; zgc:109722
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human ANKRD46 (ankyrin repeat domain 46). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ankrd46b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (50910954..50917274, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (50635889..50642194, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene procollagen C-endopeptidase enhancer b Neighboring gene progestin and adipoQ receptor family member 9 Neighboring gene collagen, type IV, alpha 6 Neighboring gene collagen, type IV, alpha 5 (Alport syndrome)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Interaction of infectious spleen and kidney necrosis virus ORF119L with PINCH leads to dominant-negative inhibition of integrin-linked kinase and cardiovascular defects in zebrafish. Yuan JM, et al. J Virol, 2015 Jan. PMID 25355883, Free PMC Article
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ankyrin repeat domain-containing protein 46
Names
ankyrin repeat domain 46

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205596.1 → NP_991159.1  ankyrin repeat domain-containing protein 46

    See identical proteins and their annotated locations for NP_991159.1

    Status: PROVISIONAL

    Source sequence(s)
    AY391435
    UniProtKB/Swiss-Prot
    Q504K9, Q6TNT2
    Related
    ENSDARP00000133092.1, ENSDART00000160398.2
    Conserved Domains (3) summary
    cd00204
    Location:15 → 128
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:16 → 105
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:15 → 42
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    50910954..50917274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166503.3 → XP_005166560.1  ankyrin repeat domain-containing protein 46 isoform X1

    See identical proteins and their annotated locations for XP_005166560.1

    UniProtKB/Swiss-Prot
    Q504K9, Q6TNT2
    Related
    ENSDARP00000020125.8, ENSDART00000022918.11
    Conserved Domains (3) summary
    cd00204
    Location:15 → 128
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:16 → 105
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:15 → 42
    ANK; ANK repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6TNT2.1 GenPept UniProtKB/Swiss-Prot:Q6TNT2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous