U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SLC3A1 solute carrier family 3 member 1 [ Canis lupus familiaris (dog) ]

Gene ID: 403700, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
SLC3A1provided by VGNC
Official Full Name
solute carrier family 3 member 1provided by VGNC
Primary source
VGNC:VGNC:46409
See related
Ensembl:ENSCAFG00845026546
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SLC3A1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (47580243..47618780)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (46562101..46597364)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (47760850..47796315)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (47287361..47322625)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (47578444..47613677)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S19-like Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1B Neighboring gene prolyl endopeptidase like Neighboring gene calmodulin-lysine N-methyltransferase Neighboring gene uncharacterized LOC111097845

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. SLC7A9 cDNA cloning and mutational analysis of SLC3A1 and SLC7A9 in canine cystinuria. Harnevik L, et al. Mamm Genome, 2006 Jul. PMID 16845473
  2. Canine cystinuria: polymorphism in the canine SLC3A1 gene and identification of a nonsense mutation in cystinuric Newfoundland dogs. Henthorn PS, et al. Hum Genet, 2000 Oct. PMID 11129328

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
amino acid transporter heavy chain SLC3A1; neutral and basic amino acid transport protein rBAT
Names
amino acid transporter SLC3A1
solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003109.1 → NP_001003109.1  amino acid transporter heavy chain SLC3A1

    See identical proteins and their annotated locations for NP_001003109.1

    Status: PROVISIONAL

    Source sequence(s)
    AF187966
    UniProtKB/TrEMBL
    A0A8P0S8B4, Q9GKM3
    Related
    ENSCAFP00845036720.1, ENSCAFT00845046819.1
    Conserved Domains (3) summary
    cd11359
    Location:131 → 584
    AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
    TIGR02403
    Location:132 → 615
    trehalose_treC; alpha,alpha-phosphotrehalase
    pfam16028
    Location:80 → 138
    SLC3A2_N; Solute carrier family 3 member 2 N-terminus

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    47580243..47618780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038678763.1 → XP_038534691.1  neutral and basic amino acid transport protein rBAT isoform X1

    UniProtKB/TrEMBL
    A0A8P0T160
    Conserved Domains (2) summary
    cd11359
    Location:129 → 553
    AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
    pfam16028
    Location:78 → 137
    SLC3A2_N; Solute carrier family 3 member 2 N-terminus

  2. XM_038678762.1 → XP_038534690.1  neutral and basic amino acid transport protein rBAT isoform X1

    UniProtKB/TrEMBL
    A0A8P0T160
    Conserved Domains (2) summary
    cd11359
    Location:129 → 553
    AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
    pfam16028
    Location:78 → 137
    SLC3A2_N; Solute carrier family 3 member 2 N-terminus

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    47287361..47322625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    47578444..47613677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    47760850..47796315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    46562101..46597364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials