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ncoa5 nuclear receptor coactivator 5 [ Danio rerio (zebrafish) ]

Gene ID: 447849, updated on 27-Mar-2024

Summary

Official Symbol
ncoa5provided by ZNC
Official Full Name
nuclear receptor coactivator 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-040912-155
See related
Ensembl:ENSDARG00000016345 AllianceGenome:ZFIN:ZDB-GENE-040912-155
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92194
Summary
Orthologous to human NCOA5 (nuclear receptor coactivator 5). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See ncoa5 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (55424543..55437091)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (55413124..55425766)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene phospholipid transfer protein Neighboring gene cathepsin A Neighboring gene solute carrier family 12 member 5a Neighboring gene uncharacterized LOC101882786 Neighboring gene uncharacterized LOC101886558 Neighboring gene N-acetyltransferase 8-like 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
nuclear receptor coactivator 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004588.1NP_001004588.1  nuclear receptor coactivator 5

    See identical proteins and their annotated locations for NP_001004588.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081621
    UniProtKB/TrEMBL
    A0A8M1N283, Q66HY6
    Related
    ENSDARP00000014595.6, ENSDART00000018270.7
    Conserved Domains (2) summary
    PLN03209
    Location:281444
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    COG0124
    Location:96166
    HisS; Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    55424543..55437091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166160.4XP_005166217.1  nuclear receptor coactivator 5 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BDI8
    Conserved Domains (2) summary
    COG0724
    Location:1168
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12341
    Location:2794
    RRM_hnRNPC_like; RNA recognition motif in heterogeneous nuclear ribonucleoprotein C (hnRNP C)-related proteins
  2. XM_005166161.4XP_005166218.1  nuclear receptor coactivator 5 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BDM6
    Conserved Domains (2) summary
    pfam08648
    Location:82148
    DUF1777; Protein of unknown function (DUF1777)
    cl17169
    Location:2759
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. XM_005166163.4XP_005166220.1  nuclear receptor coactivator 5 isoform X4

    See identical proteins and their annotated locations for XP_005166220.1

    UniProtKB/TrEMBL
    A0A8M1N283, Q66HY6
    Conserved Domains (2) summary
    PLN03209
    Location:281444
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    COG0124
    Location:96166
    HisS; Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
  4. XM_005166162.4XP_005166219.1  nuclear receptor coactivator 5 isoform X3

    UniProtKB/TrEMBL
    A0A8M2BDJ5
    Conserved Domains (1) summary
    pfam08648
    Location:2490
    DUF1777; Protein of unknown function (DUF1777)