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NFYC nuclear transcription factor Y subunit gamma [ Canis lupus familiaris (dog) ]

Gene ID: 475312, updated on 5-Mar-2024

Summary

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Official Symbol
NFYCprovided by VGNC
Official Full Name
nuclear transcription factor Y subunit gammaprovided by VGNC
Primary source
VGNC:VGNC:43792
See related
Ensembl:ENSCAFG00845009374
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See NFYC in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (2357425..2424064, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (2526350..2593255, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (2338799..2405699, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (2262892..2329774, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (2322964..2389860, complement)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 Neighboring gene uncharacterized LOC111098942 Neighboring gene potassium voltage-gated channel subfamily Q member 4 Neighboring gene microRNA mir-30c-1 Neighboring gene microRNA mir-30e Neighboring gene regulating synaptic membrane exocytosis 3 Neighboring gene uncharacterized LOC119869316 Neighboring gene protein mago nashi homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    2357425..2424064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038687389.1 → XP_038543317.1  nuclear transcription factor Y subunit gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0JQA3, A0A8C0PDK1, A0A8C0PHK5, A0A8I3NC83, A0A8I3RWU0
    Related
    ENSCAFP00845012874.1, ENSCAFT00845016552.1
    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_038687390.1 → XP_038543318.1  nuclear transcription factor Y subunit gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0JQA3, A0A8C0PDK1, A0A8C0PHK5, A0A8I3NC83, A0A8I3RWU0
    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_038687388.1 → XP_038543316.1  nuclear transcription factor Y subunit gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C0PHK5, A0A8I3RWU0
    Conserved Domains (1) summary
    COG5208
    Location:17 → 98
    HAP5; CCAAT-binding factor, subunit C [Transcription]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    2262892..2329774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038495376.1 → XP_038351304.1  nuclear transcription factor Y subunit gamma isoform X2

    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_038495377.1 → XP_038351305.1  nuclear transcription factor Y subunit gamma isoform X2

    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_038495375.1 → XP_038351303.1  nuclear transcription factor Y subunit gamma isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    2322964..2389860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038621606.1 → XP_038477534.1  nuclear transcription factor Y subunit gamma isoform X2

    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_038621607.1 → XP_038477535.1  nuclear transcription factor Y subunit gamma isoform X2

    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_038621605.1 → XP_038477533.1  nuclear transcription factor Y subunit gamma isoform X1

    Conserved Domains (1) summary
    COG5208
    Location:17 → 98
    HAP5; CCAAT-binding factor, subunit C [Transcription]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    2338799..2405699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038557732.1 → XP_038413660.1  nuclear transcription factor Y subunit gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0JQA3, A0A8C0PDK1, A0A8C0PHK5, A0A8I3NC83, A0A8I3RWU0
    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_038557733.1 → XP_038413661.1  nuclear transcription factor Y subunit gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0JQA3, A0A8C0PDK1, A0A8C0PHK5, A0A8I3NC83, A0A8I3RWU0
    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_038557731.1 → XP_038413659.1  nuclear transcription factor Y subunit gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C0PHK5, A0A8I3RWU0
    Conserved Domains (1) summary
    COG5208
    Location:17 → 98
    HAP5; CCAAT-binding factor, subunit C [Transcription]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    2526350..2593255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005628865.4 → XP_005628922.1  nuclear transcription factor Y subunit gamma isoform X2

    See identical proteins and their annotated locations for XP_005628922.1

    UniProtKB/TrEMBL
    A0A8C0JQA3, A0A8C0PDK1, A0A8C0PHK5, A0A8I3NC83, A0A8I3RWU0
    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_850960.6 → XP_856053.1  nuclear transcription factor Y subunit gamma isoform X2

    See identical proteins and their annotated locations for XP_856053.1

    UniProtKB/TrEMBL
    A0A8C0JQA3, A0A8C0PDK1, A0A8C0PHK5, A0A8I3NC83, A0A8I3RWU0
    Conserved Domains (1) summary
    COG5208
    Location:17 → 123
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_022427744.1 → XP_022283452.1  nuclear transcription factor Y subunit gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C0PHK5, A0A8I3RWU0
    Conserved Domains (1) summary
    COG5208
    Location:17 → 98
    HAP5; CCAAT-binding factor, subunit C [Transcription]
Nucleotide Protein
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