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CBX5 chromobox 5 [ Canis lupus familiaris (dog) ]

Gene ID: 477593, updated on 5-Mar-2024

Summary

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Official Symbol
CBX5provided by VGNC
Official Full Name
chromobox 5provided by VGNC
Primary source
VGNC:VGNC:38767
See related
Ensembl:ENSCAFG00845017851
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CBX5 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (1017407..1054956)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (45197396..45234943, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (45601201..45638748, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (1036373..1073913)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (1017977..1055663)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene nuclear factor, erythroid 2 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 Neighboring gene uncharacterized LOC119866354 Neighboring gene single-strand-selective monofunctional uracil-DNA glycosylase 1 Neighboring gene uncharacterized LOC111092898

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromobox protein homolog 5
Names
chromobox homolog 5 (HP1 alpha homolog, Drosophila)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    1017407..1054956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038438000.1 → XP_038293928.1  chromobox protein homolog 5 isoform X2

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:115 → 172
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  2. XM_038437997.1 → XP_038293925.1  chromobox protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  3. XM_038437996.1 → XP_038293924.1  chromobox protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Related
    ENSCAFP00845024733.1, ENSCAFT00845031596.1
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  4. XM_038437998.1 → XP_038293926.1  chromobox protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  5. XM_038437999.1 → XP_038293927.1  chromobox protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    1036373..1073913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038512706.1 → XP_038368634.1  chromobox protein homolog 5 isoform X2

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:115 → 172
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  2. XM_038512703.1 → XP_038368631.1  chromobox protein homolog 5 isoform X1

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  3. XM_038512702.1 → XP_038368630.1  chromobox protein homolog 5 isoform X1

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  4. XM_038512704.1 → XP_038368632.1  chromobox protein homolog 5 isoform X1

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  5. XM_038512705.1 → XP_038368633.1  chromobox protein homolog 5 isoform X1

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    1017977..1055663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038640459.1 → XP_038496387.1  chromobox protein homolog 5 isoform X2

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:115 → 172
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  2. XM_038640456.1 → XP_038496384.1  chromobox protein homolog 5 isoform X1

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  3. XM_038640455.1 → XP_038496383.1  chromobox protein homolog 5 isoform X1

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  4. XM_038640457.1 → XP_038496385.1  chromobox protein homolog 5 isoform X1

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  5. XM_038640458.1 → XP_038496386.1  chromobox protein homolog 5 isoform X1

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    45601201..45638748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038577847.1 → XP_038433775.1  chromobox protein homolog 5 isoform X2

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:115 → 172
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  2. XM_038577844.1 → XP_038433772.1  chromobox protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  3. XM_038577843.1 → XP_038433771.1  chromobox protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  4. XM_038577845.1 → XP_038433773.1  chromobox protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  5. XM_038577846.1 → XP_038433774.1  chromobox protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    45197396..45234943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038460194.1 → XP_038316122.1  chromobox protein homolog 5 isoform X2

    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:115 → 172
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  2. XM_005636747.4 → XP_005636804.1  chromobox protein homolog 5 isoform X1

    See identical proteins and their annotated locations for XP_005636804.1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  3. XM_534787.7 → XP_534787.3  chromobox protein homolog 5 isoform X1

    See identical proteins and their annotated locations for XP_534787.3

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  4. XM_003433566.5 → XP_003433614.1  chromobox protein homolog 5 isoform X1

    See identical proteins and their annotated locations for XP_003433614.1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

  5. XM_014108450.3 → XP_013963925.1  chromobox protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8W2, A0A8C0RTW7, A0A8I3P9H2
    Conserved Domains (2) summary
    cd18651
    Location:19 → 68
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cd18655
    Location:116 → 173
    CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha
Nucleotide Protein
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