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VIRMA vir like m6A methyltransferase associated [ Canis lupus familiaris (dog) ]

Gene ID: 477942, updated on 11-Apr-2024

Summary

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Official Symbol
VIRMAprovided by VGNC
Official Full Name
vir like m6A methyltransferase associatedprovided by VGNC
Primary source
VGNC:VGNC:48267
See related
Ensembl:ENSCAFG00845015063
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
KIAA1429
Orthologs
human mouse all
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Genomic context

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See VIRMA in Genome Data Viewer
Location:
chromosome: 29
Exon count:
24
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 29 NC_051833.1 (39416236..39474970, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 29 NC_006611.4 (39373642..39432868, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 29 NC_049250.1 (39865414..39924438, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 29 NC_049289.1 (39428976..39487947, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 29 NC_049770.1 (39424265..39483428, complement)

Chromosome 29 - NC_051833.1Genomic Context describing neighboring genes Neighboring gene RAD54 homolog B Neighboring gene charged multivesicular body protein 3-like Neighboring gene fibrinogen silencer binding protein Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC119866745 Neighboring gene epithelial splicing regulatory protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA N6-methyladenosine methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein virilizer homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051833.1 Reference ROS_Cfam_1.0

    Range
    39416236..39474970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038441637.1 → XP_038297565.1  protein virilizer homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0KFQ6, A0A8C0KHH6, A0A8C0THZ0, A0A8I3RYP6
    Related
    ENSCAFP00845021276.1, ENSCAFT00845027037.1
    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal

  2. XM_038441636.1 → XP_038297564.1  protein virilizer homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0KFQ6, A0A8C0KI86, A0A8C0P5T0, A0A8I3NWL7
    Related
    ENSCAFP00845021221.1, ENSCAFT00845026959.1
    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049289.1 Alternate UMICH_Zoey_3.1

    Range
    39428976..39487947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038516205.1 → XP_038372133.1  protein virilizer homolog isoform X2

    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal

  2. XM_038516204.1 → XP_038372132.1  protein virilizer homolog isoform X1

    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049770.1 Alternate UNSW_CanFamBas_1.0

    Range
    39424265..39483428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038644017.1 → XP_038499945.1  protein virilizer homolog isoform X2

    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal

  2. XM_038644016.1 → XP_038499944.1  protein virilizer homolog isoform X1

    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049250.1 Alternate UU_Cfam_GSD_1.0

    Range
    39865414..39924438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038579781.1 → XP_038435709.1  protein virilizer homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0KFQ6, A0A8C0KHH6, A0A8C0THZ0, A0A8I3RYP6
    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal

  2. XM_038579780.1 → XP_038435708.1  protein virilizer homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0KFQ6, A0A8C0KI86, A0A8C0P5T0, A0A8I3NWL7
    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006611.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    39373642..39432868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038460854.1 → XP_038316782.1  protein virilizer homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0KFQ6, A0A8C0KHH6, A0A8C0THZ0, A0A8I3RYP6
    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal

  2. XM_038460853.1 → XP_038316781.1  protein virilizer homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0KFQ6, A0A8C0KI86, A0A8C0P5T0, A0A8I3NWL7
    Conserved Domains (1) summary
    pfam15912
    Location:5 → 235
    VIR_N; Virilizer, N-terminal
Nucleotide Protein
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