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USP13 ubiquitin specific peptidase 13 [ Canis lupus familiaris (dog) ]

Gene ID: 478640, updated on 5-Mar-2024

Summary

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Official Symbol
USP13provided by VGNC
Official Full Name
ubiquitin specific peptidase 13provided by VGNC
Primary source
VGNC:VGNC:49638
See related
Ensembl:ENSCAFG00845016860
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See USP13 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
24
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 34 NC_051838.1 (12957093..13074094)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 34 NC_006616.4 (17200915..17303172)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 34 NC_049255.1 (13230757..13347935)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 34 NC_049294.1 (13008227..13125027)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 34 NC_049775.1 (12990863..13107688)

Chromosome 34 - NC_051838.1Genomic Context describing neighboring genes Neighboring gene SIN3-HDAC complex-associated factor-like Neighboring gene 40S ribosomal protein S26-like Neighboring gene uncharacterized LOC119867490 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene NADH:ubiquinone oxidoreductase subunit B5 Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC111093905

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 13
Names
ubiquitin specific peptidase 13 (isopeptidase T-3)
XP_038301541.1
XP_038301542.1
XP_038301543.1
XP_038301544.1
XP_038318806.1
XP_038318807.1
XP_038318808.1
XP_038318809.1
XP_038375721.1
XP_038375722.1
XP_038375723.1
XP_038375724.1
XP_038439361.1
XP_038439362.1
XP_038439363.1
XP_038439364.1
XP_038503773.1
XP_038503774.1
XP_038503775.1
XP_038503777.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051838.1 Reference ROS_Cfam_1.0

    Range
    12957093..13074094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038445613.1 → XP_038301541.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LH16, A0A8C0RMN4, A0A8C0TAK8, A0A8I3NY77
    Related
    ENSCAFP00845023578.1, ENSCAFT00845030056.1
    Conserved Domains (2) summary
    COG5207
    Location:30 → 860
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:337 → 858
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_038445614.1 → XP_038301542.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RMN4
    Conserved Domains (2) summary
    COG5207
    Location:12 → 816
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:293 → 814
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_038445615.1 → XP_038301543.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NRR8
    Conserved Domains (2) summary
    COG5207
    Location:94 → 795
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:272 → 793
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_038445616.1 → XP_038301544.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X4

    UniProtKB/TrEMBL
    A0A8C0NRR8
    Conserved Domains (2) summary
    COG5207
    Location:7 → 702
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:179 → 700
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049294.1 Alternate UMICH_Zoey_3.1

    Range
    13008227..13125027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038519793.1 → XP_038375721.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X1

    Conserved Domains (2) summary
    COG5207
    Location:30 → 860
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:337 → 858
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_038519794.1 → XP_038375722.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X2

    Conserved Domains (2) summary
    COG5207
    Location:12 → 816
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:293 → 814
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_038519795.1 → XP_038375723.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X3

    Conserved Domains (2) summary
    COG5207
    Location:94 → 795
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:272 → 793
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_038519796.1 → XP_038375724.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X4

    Conserved Domains (2) summary
    COG5207
    Location:7 → 702
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:179 → 700
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049775.1 Alternate UNSW_CanFamBas_1.0

    Range
    12990863..13107688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038647845.1 → XP_038503773.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X1

    Conserved Domains (2) summary
    COG5207
    Location:30 → 860
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:337 → 858
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_038647846.1 → XP_038503774.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X2

    Conserved Domains (2) summary
    COG5207
    Location:12 → 816
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:293 → 814
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_038647847.1 → XP_038503775.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X3

    Conserved Domains (2) summary
    COG5207
    Location:94 → 795
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:272 → 793
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_038647849.1 → XP_038503777.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X4

    Conserved Domains (2) summary
    COG5207
    Location:7 → 702
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:179 → 700
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049255.1 Alternate UU_Cfam_GSD_1.0

    Range
    13230757..13347935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038583433.1 → XP_038439361.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LH16, A0A8C0RMN4, A0A8C0TAK8, A0A8I3NY77
    Conserved Domains (2) summary
    COG5207
    Location:30 → 860
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:337 → 858
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_038583434.1 → XP_038439362.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RMN4
    Conserved Domains (2) summary
    COG5207
    Location:12 → 816
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:293 → 814
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_038583435.1 → XP_038439363.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NRR8
    Conserved Domains (2) summary
    COG5207
    Location:94 → 795
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:272 → 793
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_038583436.1 → XP_038439364.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X4

    UniProtKB/TrEMBL
    A0A8C0NRR8
    Conserved Domains (2) summary
    COG5207
    Location:7 → 702
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:179 → 700
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006616.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    17200915..17303172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038462878.1 → XP_038318806.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X5

    UniProtKB/TrEMBL
    A0A8I3NRV0, A0A8I3P199, A0A8P0PCT0, A0A8P0SG53
    Conserved Domains (2) summary
    COG5207
    Location:30 → 794
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:337 → 610
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_038462879.1 → XP_038318807.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X6

    UniProtKB/TrEMBL
    A0A8I3P199, A0A8P0PCT0
    Conserved Domains (2) summary
    COG5207
    Location:12 → 750
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:293 → 566
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_038462880.1 → XP_038318808.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X7

    UniProtKB/TrEMBL
    A0A8I3P199, A0A8P0PCT0
    Conserved Domains (2) summary
    COG5207
    Location:94 → 729
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:272 → 545
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_038462881.1 → XP_038318809.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X8

    UniProtKB/TrEMBL
    A0A8C0NRR8
    Conserved Domains (2) summary
    COG5207
    Location:7 → 636
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:179 → 452
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein
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