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TPGS2 tubulin polyglutamylase complex subunit 2 [ Canis lupus familiaris (dog) ]

Gene ID: 480156, updated on 5-Mar-2024

Summary

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Official Symbol
TPGS2provided by VGNC
Official Full Name
tubulin polyglutamylase complex subunit 2provided by VGNC
Primary source
VGNC:VGNC:47737
See related
Ensembl:ENSCAFG00845004346
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TPGS2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 7 NC_051811.1 (53359055..53426746)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 7 NC_006589.4 (52814760..52882422)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 7 NC_049228.1 (53358830..53426514)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 7 NC_049267.1 (53043064..53110715)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 7 NC_049748.1 (53066213..53133575)

Chromosome 7 - NC_051811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102153910 Neighboring gene CUGBP Elav-like family member 4 Neighboring gene KIAA1328 Neighboring gene protein SET-like Neighboring gene uncharacterized LOC119881557 Neighboring gene formin homology 2 domain containing 3 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein polyglutamylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin polyglutamylase complex subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051811.1 Reference ROS_Cfam_1.0

    Range
    53359055..53426746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038672264.1 → XP_038528192.1  tubulin polyglutamylase complex subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RBK6, A0A8I3RTI1
    Related
    ENSCAFP00845006254.1, ENSCAFT00845007931.1
    Conserved Domains (1) summary
    smart00860
    Location:75 → 180
    SMI1_KNR4; SMI1 / KNR4 family

  2. XM_038672263.1 → XP_038528191.1  tubulin polyglutamylase complex subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KE56, A0A8C0QHY2, A0A8I3MS35, A0A8P0NJB2
    Related
    ENSCAFP00845006200.1, ENSCAFT00845007831.1
    Conserved Domains (1) summary
    smart00860
    Location:75 → 223
    SMI1_KNR4; SMI1 / KNR4 family

  3. XM_038672265.1 → XP_038528193.1  tubulin polyglutamylase complex subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KE56, A0A8C0QHY2, A0A8P0NJB2
    Conserved Domains (1) summary
    smart00860
    Location:2 → 144
    SMI1_KNR4; SMI1 / KNR4 family

  4. XM_038672266.1 → XP_038528194.1  tubulin polyglutamylase complex subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KE56, A0A8C0QHY2, A0A8P0NJB2
    Conserved Domains (1) summary
    smart00860
    Location:2 → 144
    SMI1_KNR4; SMI1 / KNR4 family

RNA

  1. XR_005430221.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049267.1 Alternate UMICH_Zoey_3.1

    Range
    53043064..53110715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038482026.1 → XP_038337954.1  tubulin polyglutamylase complex subunit 2 isoform X2

    Conserved Domains (1) summary
    smart00860
    Location:75 → 180
    SMI1_KNR4; SMI1 / KNR4 family

  2. XM_038482025.1 → XP_038337953.1  tubulin polyglutamylase complex subunit 2 isoform X1

    Conserved Domains (1) summary
    smart00860
    Location:75 → 223
    SMI1_KNR4; SMI1 / KNR4 family

  3. XM_038482027.1 → XP_038337955.1  tubulin polyglutamylase complex subunit 2 isoform X3

    Conserved Domains (1) summary
    smart00860
    Location:2 → 144
    SMI1_KNR4; SMI1 / KNR4 family

  4. XM_038482028.1 → XP_038337956.1  tubulin polyglutamylase complex subunit 2 isoform X3

    Conserved Domains (1) summary
    smart00860
    Location:2 → 144
    SMI1_KNR4; SMI1 / KNR4 family

RNA

  1. XR_005328662.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049748.1 Alternate UNSW_CanFamBas_1.0

    Range
    53066213..53133575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038607576.1 → XP_038463504.1  tubulin polyglutamylase complex subunit 2 isoform X2

    Conserved Domains (1) summary
    smart00860
    Location:75 → 180
    SMI1_KNR4; SMI1 / KNR4 family

  2. XM_038607575.1 → XP_038463503.1  tubulin polyglutamylase complex subunit 2 isoform X1

    Conserved Domains (1) summary
    smart00860
    Location:75 → 223
    SMI1_KNR4; SMI1 / KNR4 family

  3. XM_038607577.1 → XP_038463505.1  tubulin polyglutamylase complex subunit 2 isoform X3

    Conserved Domains (1) summary
    smart00860
    Location:2 → 144
    SMI1_KNR4; SMI1 / KNR4 family

RNA

  1. XR_005397016.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049228.1 Alternate UU_Cfam_GSD_1.0

    Range
    53358830..53426514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038543469.1 → XP_038399397.1  tubulin polyglutamylase complex subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RBK6, A0A8I3RTI1
    Conserved Domains (1) summary
    smart00860
    Location:75 → 180
    SMI1_KNR4; SMI1 / KNR4 family

  2. XM_038543468.1 → XP_038399396.1  tubulin polyglutamylase complex subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KE56, A0A8C0QHY2, A0A8I3MS35, A0A8P0NJB2
    Conserved Domains (1) summary
    smart00860
    Location:75 → 223
    SMI1_KNR4; SMI1 / KNR4 family

  3. XM_038543470.1 → XP_038399398.1  tubulin polyglutamylase complex subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KE56, A0A8C0QHY2, A0A8P0NJB2
    Conserved Domains (1) summary
    smart00860
    Location:2 → 144
    SMI1_KNR4; SMI1 / KNR4 family

  4. XM_038543472.1 → XP_038399400.1  tubulin polyglutamylase complex subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KE56, A0A8C0QHY2, A0A8P0NJB2
    Conserved Domains (1) summary
    smart00860
    Location:2 → 144
    SMI1_KNR4; SMI1 / KNR4 family

RNA

  1. XR_005362500.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006589.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    52814760..52882422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005622861.4 → XP_005622918.1  tubulin polyglutamylase complex subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RBK6, A0A8I3RTI1
    Conserved Domains (1) summary
    smart00860
    Location:75 → 180
    SMI1_KNR4; SMI1 / KNR4 family

  2. XM_537279.7 → XP_537279.4  tubulin polyglutamylase complex subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KE56, A0A8C0QHY2, A0A8I3MS35, A0A8P0NJB2
    Conserved Domains (1) summary
    smart00860
    Location:75 → 223
    SMI1_KNR4; SMI1 / KNR4 family

  3. XM_014115453.3 → XP_013970928.1  tubulin polyglutamylase complex subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KE56, A0A8C0QHY2, A0A8P0NJB2
    Conserved Domains (1) summary
    smart00860
    Location:2 → 144
    SMI1_KNR4; SMI1 / KNR4 family

  4. XM_022421460.2 → XP_022277168.1  tubulin polyglutamylase complex subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KE56, A0A8C0QHY2, A0A8P0NJB2
    Conserved Domains (1) summary
    smart00860
    Location:2 → 144
    SMI1_KNR4; SMI1 / KNR4 family

RNA

  1. XR_292793.4 RNA Sequence

Nucleotide Protein
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