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OPN1SW opsin 1, short wave sensitive [ Canis lupus familiaris (dog) ]

Gene ID: 482267, updated on 5-Mar-2024

Summary

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Official Symbol
OPN1SWprovided by VGNC
Official Full Name
opsin 1, short wave sensitiveprovided by VGNC
Primary source
VGNC:VGNC:44129
See related
Ensembl:ENSCAFG00845023668
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See OPN1SW in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (7631370..7634827)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (7552256..7555713)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (7723749..7727206)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (7836320..7839777)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (7578515..7581972)

Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 136 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene calumenin Neighboring gene golgi associated RAB2 interactor 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phototransduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short-wave-sensitive opsin 1
Names
opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051818.1 Reference ROS_Cfam_1.0

    Range
    7631370..7634827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038685972.1 → XP_038541900.1  short-wave-sensitive opsin 1

    UniProtKB/TrEMBL
    A0A8C0L7B2, A0A8C0PGR1, A0A8I3PJU6
    Related
    ENSCAFP00845032779.1, ENSCAFT00845041791.1
    Conserved Domains (1) summary
    cd15076
    Location:36 → 314
    7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049274.1 Alternate UMICH_Zoey_3.1

    Range
    7836320..7839777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038495279.1 → XP_038351207.1  short-wave-sensitive opsin 1

    Conserved Domains (1) summary
    cd15076
    Location:36 → 314
    7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

    Range
    7578515..7581972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038620295.1 → XP_038476223.1  short-wave-sensitive opsin 1

    Conserved Domains (1) summary
    cd15076
    Location:36 → 314
    7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

    Range
    7723749..7727206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038556374.1 → XP_038412302.1  short-wave-sensitive opsin 1

    UniProtKB/TrEMBL
    A0A8C0L7B2, A0A8C0PGR1, A0A8I3PJU6
    Conserved Domains (1) summary
    cd15076
    Location:36 → 314
    7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    7552256..7555713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_539386.6 → XP_539386.2  short-wave-sensitive opsin 1

    UniProtKB/TrEMBL
    A0A8C0L7B2, A0A8C0PGR1, A0A8I3PJU6
    Conserved Domains (1) summary
    cd15076
    Location:36 → 314
    7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein
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