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RFNG RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [ Canis lupus familiaris (dog) ]

Gene ID: 483376, updated on 5-Mar-2024

Summary

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Official Symbol
RFNGprovided by VGNC
Official Full Name
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferaseprovided by VGNC
Primary source
VGNC:VGNC:45499
See related
Ensembl:ENSCAFG00845008009
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RFNG in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (860786..864644)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (869336..873211)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (1091191..1095050)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (885726..889598)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (1012628..1016502)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene dihydrouridine synthase 1 like Neighboring gene G protein pathway suppressor 1 Neighboring gene uncharacterized LOC102154270 Neighboring gene carbonyl reductase [NADPH] 2-like Neighboring gene dicarbonyl and L-xylulose reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-N-acetylglucosaminyltransferase radical fringe; LOW QUALITY PROTEIN: beta-1,3-N-acetylglucosaminyltransferase radical fringe
XP_038340558.1
XP_038402200.1
XP_038466207.1
XP_038531318.1
XP_540495.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    860786..864644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038675390.1 → XP_038531318.1  beta-1,3-N-acetylglucosaminyltransferase radical fringe

    UniProtKB/TrEMBL
    A0A8C0QYQ2, A0A8C0RN01, A0A8I3NJ28
    Related
    ENSCAFP00845010964.1, ENSCAFT00845014145.1
    Conserved Domains (1) summary
    pfam02434
    Location:58 → 308
    Fringe; Fringe-like

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    885726..889598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038484630.1 → XP_038340558.1  LOW QUALITY PROTEIN: beta-1,3-N-acetylglucosaminyltransferase radical fringe

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    1012628..1016502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038610279.1 → XP_038466207.1  beta-1,3-N-acetylglucosaminyltransferase radical fringe

    Conserved Domains (1) summary
    pfam02434
    Location:58 → 308
    Fringe; Fringe-like

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    1091191..1095050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038546272.1 → XP_038402200.1  beta-1,3-N-acetylglucosaminyltransferase radical fringe

    UniProtKB/TrEMBL
    A0A8C0RN01, A0A8I3NJ28

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    869336..873211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_540495.5 → XP_540495.5  beta-1,3-N-acetylglucosaminyltransferase radical fringe

    UniProtKB/TrEMBL
    A0A8C0QYQ2, A0A8C0RN01, A0A8I3NJ28
    Conserved Domains (1) summary
    pfam02434
    Location:58 → 308
    Fringe; Fringe-like
Nucleotide Protein
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