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LOC485141 tripartite motif-containing protein 77-like [ Canis lupus familiaris (dog) ]

Gene ID: 485141, updated on 22-Jan-2024

Summary

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Gene symbol
LOC485141
Gene description
tripartite motif-containing protein 77-like
See related
Ensembl:ENSCAFG00845024925
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (10478284..10484020, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (10179428..10185163)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (10382061..10387785, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (10272960..10278695, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (10332017..10337559, complement)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene N-acetylated alpha-linked acidic dipeptidase 2 Neighboring gene uncharacterized LOC119864954 Neighboring gene tripartite motif-containing protein 43-like Neighboring gene ragulator complex protein LAMTOR5-like Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 77-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    10478284..10484020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038429638.1 → XP_038285566.1  tripartite motif-containing protein 77-like

    UniProtKB/TrEMBL
    A0A8C0KWN6, A0A8C0R2M8, A0A8C0TA24, A0A8I3PTG0, A0A8I3PXD1
    Related
    ENSCAFP00845034587.1, ENSCAFT00845044139.1
    Conserved Domains (4) summary
    cd00162
    Location:15 → 55
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:87 → 139
    Bbox_SF; B-box-type zinc finger superfamily
    cl02614
    Location:285 → 446
    SPRY; SPRY domain
    cl17238
    Location:12 → 56
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    10272960..10278695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038506100.1 → XP_038362028.1  tripartite motif-containing protein 77-like

    Conserved Domains (4) summary
    cd00162
    Location:15 → 55
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:87 → 139
    Bbox_SF; B-box-type zinc finger superfamily
    cl02614
    Location:285 → 446
    SPRY; SPRY domain
    cl17238
    Location:12 → 56
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    10332017..10337559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038632315.1 → XP_038488243.1  tripartite motif-containing protein 77-like

    Conserved Domains (4) summary
    cd00162
    Location:15 → 55
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:87 → 139
    Bbox_SF; B-box-type zinc finger superfamily
    cl02614
    Location:285 → 446
    SPRY; SPRY domain
    cl17238
    Location:12 → 56
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    10382061..10387785 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038569337.1 → XP_038425265.1  tripartite motif-containing protein 77-like

    UniProtKB/TrEMBL
    A0A8C0KWN6, A0A8C0N681, A0A8I3PTG0
    Conserved Domains (4) summary
    cd00162
    Location:15 → 55
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:87 → 139
    Bbox_SF; B-box-type zinc finger superfamily
    cl02614
    Location:285 → 446
    SPRY; SPRY domain
    cl17238
    Location:12 → 56
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    10179428..10185163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_542259.6 → XP_542259.5  tripartite motif-containing protein 77-like

    UniProtKB/TrEMBL
    A0A8C0KWN6, A0A8C0R2M8, A0A8C0TA24, A0A8I3PTG0, A0A8I3PXD1
    Conserved Domains (4) summary
    cd00162
    Location:15 → 55
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:87 → 139
    Bbox_SF; B-box-type zinc finger superfamily
    cl02614
    Location:285 → 446
    SPRY; SPRY domain
    cl17238
    Location:12 → 56
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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