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HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 [ Canis lupus familiaris (dog) ]

Gene ID: 486330, updated on 5-Mar-2024

Summary

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Official Symbol
HPS4provided by VGNC
Official Full Name
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2provided by VGNC
Primary source
VGNC:VGNC:41776
See related
Ensembl:ENSCAFG00845029576
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See HPS4 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
21
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (20495535..20522930, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (19995923..20023346, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (20537450..20564852, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (20212135..20239523, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (20468000..20495466, complement)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene seizure related 6 homolog like Neighboring gene uncharacterized LOC111092535 Neighboring gene aspartate beta-hydroxylase domain containing 2 Neighboring gene uncharacterized LOC102152804 Neighboring gene SRR1 domain containing Neighboring gene tuftelin interacting protein 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Hermansky-Pudlak syndrome 4 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    20495535..20522930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038437098.1 → XP_038293026.1  Hermansky-Pudlak syndrome 4 protein isoform X8

    UniProtKB/TrEMBL
    A0A8I3S784
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 45
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:591 → 689
    Intu_longin_3; Intu longin-like domain 3

  2. XM_038437096.1 → XP_038293024.1  Hermansky-Pudlak syndrome 4 protein isoform X6

    UniProtKB/TrEMBL
    A0A8C0Z6Z8
    Related
    ENSCAFP00845041175.1, ENSCAFT00845052481.1
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 121
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:605 → 703
    Intu_longin_3; Intu longin-like domain 3

  3. XM_038437092.1 → XP_038293020.1  Hermansky-Pudlak syndrome 4 protein isoform X2

    UniProtKB/TrEMBL
    A0A8I3Q0N5, A0A8I3S784
    Related
    ENSCAFP00845041122.1, ENSCAFT00845052416.1
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 121
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:639 → 737
    Intu_longin_3; Intu longin-like domain 3

  4. XM_038437100.1 → XP_038293028.1  Hermansky-Pudlak syndrome 4 protein isoform X10

    UniProtKB/TrEMBL
    A0A8C0TX07, A0A8P0P0U9
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:531 → 629
    Intu_longin_3; Intu longin-like domain 3

  5. XM_038437099.1 → XP_038293027.1  Hermansky-Pudlak syndrome 4 protein isoform X9

    UniProtKB/TrEMBL
    A0A8I3S784
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:571 → 669
    Intu_longin_3; Intu longin-like domain 3

  6. XM_038437095.1 → XP_038293023.1  Hermansky-Pudlak syndrome 4 protein isoform X5

    UniProtKB/TrEMBL
    A0A8C0TX07, A0A8P0P0U9
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:612 → 710
    Intu_longin_3; Intu longin-like domain 3

  7. XM_038437094.1 → XP_038293022.1  Hermansky-Pudlak syndrome 4 protein isoform X4

    UniProtKB/TrEMBL
    A0A8C0Z6Z8
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:618 → 716
    Intu_longin_3; Intu longin-like domain 3

  8. XM_038437093.1 → XP_038293021.1  Hermansky-Pudlak syndrome 4 protein isoform X3

    UniProtKB/TrEMBL
    A0A8I3S784
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 710
    Intu_longin_3; Intu longin-like domain 3

  9. XM_038437089.1 → XP_038293017.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8I3S784
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 750
    Intu_longin_3; Intu longin-like domain 3

  10. XM_038437090.1 → XP_038293018.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8I3S784
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 750
    Intu_longin_3; Intu longin-like domain 3

  11. XM_038437091.1 → XP_038293019.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8I3S784
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 750
    Intu_longin_3; Intu longin-like domain 3

  12. XM_038437097.1 → XP_038293025.1  Hermansky-Pudlak syndrome 4 protein isoform X7

    UniProtKB/TrEMBL
    A0A8I3S784
    Related
    ENSCAFP00845041136.1, ENSCAFT00845052434.1
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 702
    Intu_longin_3; Intu longin-like domain 3

  13. XM_038437103.1 → XP_038293031.1  Hermansky-Pudlak syndrome 4 protein isoform X12

    UniProtKB/TrEMBL
    A0A8I3Q802
    Conserved Domains (1) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4

  14. XM_038437102.1 → XP_038293030.1  Hermansky-Pudlak syndrome 4 protein isoform X11

    UniProtKB/TrEMBL
    A0A8I3Q802
    Conserved Domains (1) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    20212135..20239523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038511998.1 → XP_038367926.1  Hermansky-Pudlak syndrome 4 protein isoform X8

  2. XM_038511996.1 → XP_038367924.1  Hermansky-Pudlak syndrome 4 protein isoform X6

  3. XM_038511992.1 → XP_038367920.1  Hermansky-Pudlak syndrome 4 protein isoform X2

  4. XM_038512000.1 → XP_038367928.1  Hermansky-Pudlak syndrome 4 protein isoform X10

    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:531 → 629
    Intu_longin_3; Intu longin-like domain 3

  5. XM_038511999.1 → XP_038367927.1  Hermansky-Pudlak syndrome 4 protein isoform X9

  6. XM_038511995.1 → XP_038367923.1  Hermansky-Pudlak syndrome 4 protein isoform X5

    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:612 → 710
    Intu_longin_3; Intu longin-like domain 3

  7. XM_038511994.1 → XP_038367922.1  Hermansky-Pudlak syndrome 4 protein isoform X4

  8. XM_038511993.1 → XP_038367921.1  Hermansky-Pudlak syndrome 4 protein isoform X3

  9. XM_038511989.1 → XP_038367917.1  Hermansky-Pudlak syndrome 4 protein isoform X1

  10. XM_038511990.1 → XP_038367918.1  Hermansky-Pudlak syndrome 4 protein isoform X1

  11. XM_038511991.1 → XP_038367919.1  Hermansky-Pudlak syndrome 4 protein isoform X1

  12. XM_038511997.1 → XP_038367925.1  Hermansky-Pudlak syndrome 4 protein isoform X7

  13. XM_038512002.1 → XP_038367930.1  Hermansky-Pudlak syndrome 4 protein isoform X12

  14. XM_038512001.1 → XP_038367929.1  Hermansky-Pudlak syndrome 4 protein isoform X11

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    20468000..20495466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038639698.1 → XP_038495626.1  Hermansky-Pudlak syndrome 4 protein isoform X8

  2. XM_038639696.1 → XP_038495624.1  Hermansky-Pudlak syndrome 4 protein isoform X6

  3. XM_038639692.1 → XP_038495620.1  Hermansky-Pudlak syndrome 4 protein isoform X2

  4. XM_038639700.1 → XP_038495628.1  Hermansky-Pudlak syndrome 4 protein isoform X10

    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:531 → 629
    Intu_longin_3; Intu longin-like domain 3

  5. XM_038639699.1 → XP_038495627.1  Hermansky-Pudlak syndrome 4 protein isoform X9

  6. XM_038639695.1 → XP_038495623.1  Hermansky-Pudlak syndrome 4 protein isoform X5

    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:612 → 710
    Intu_longin_3; Intu longin-like domain 3

  7. XM_038639694.1 → XP_038495622.1  Hermansky-Pudlak syndrome 4 protein isoform X4

  8. XM_038639693.1 → XP_038495621.1  Hermansky-Pudlak syndrome 4 protein isoform X3

  9. XM_038639689.1 → XP_038495617.1  Hermansky-Pudlak syndrome 4 protein isoform X1

  10. XM_038639690.1 → XP_038495618.1  Hermansky-Pudlak syndrome 4 protein isoform X1

  11. XM_038639691.1 → XP_038495619.1  Hermansky-Pudlak syndrome 4 protein isoform X1

  12. XM_038639697.1 → XP_038495625.1  Hermansky-Pudlak syndrome 4 protein isoform X7

  13. XM_038639702.1 → XP_038495630.1  Hermansky-Pudlak syndrome 4 protein isoform X12

  14. XM_038639701.1 → XP_038495629.1  Hermansky-Pudlak syndrome 4 protein isoform X11

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    20537450..20564852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038575504.1 → XP_038431432.1  Hermansky-Pudlak syndrome 4 protein isoform X8

    UniProtKB/TrEMBL
    A0A8C0Z6Z8

  2. XM_038575502.1 → XP_038431430.1  Hermansky-Pudlak syndrome 4 protein isoform X6

    UniProtKB/TrEMBL
    A0A8C0Z6Z8

  3. XM_038575498.1 → XP_038431426.1  Hermansky-Pudlak syndrome 4 protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0Z6Z8

  4. XM_038575506.1 → XP_038431434.1  Hermansky-Pudlak syndrome 4 protein isoform X10

    UniProtKB/TrEMBL
    A0A8C0TX07, A0A8P0P0U9
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:531 → 629
    Intu_longin_3; Intu longin-like domain 3

  5. XM_038575505.1 → XP_038431433.1  Hermansky-Pudlak syndrome 4 protein isoform X9

    UniProtKB/TrEMBL
    A0A8C0Z6Z8

  6. XM_038575501.1 → XP_038431429.1  Hermansky-Pudlak syndrome 4 protein isoform X5

    UniProtKB/TrEMBL
    A0A8C0TX07, A0A8P0P0U9
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:612 → 710
    Intu_longin_3; Intu longin-like domain 3

  7. XM_038575500.1 → XP_038431428.1  Hermansky-Pudlak syndrome 4 protein isoform X4

    UniProtKB/TrEMBL
    A0A8C0Z6Z8

  8. XM_038575499.1 → XP_038431427.1  Hermansky-Pudlak syndrome 4 protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0Z701

  9. XM_038575495.1 → XP_038431423.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0Z6Z8

  10. XM_038575496.1 → XP_038431424.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0Z6Z8

  11. XM_038575497.1 → XP_038431425.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0Z6Z8

  12. XM_038575503.1 → XP_038431431.1  Hermansky-Pudlak syndrome 4 protein isoform X7

    UniProtKB/TrEMBL
    A0A8C0Z701

  13. XM_038575508.1 → XP_038431436.1  Hermansky-Pudlak syndrome 4 protein isoform X12

    UniProtKB/TrEMBL
    A0A8I3Q802

  14. XM_038575507.1 → XP_038431435.1  Hermansky-Pudlak syndrome 4 protein isoform X11

    UniProtKB/TrEMBL
    A0A8I3Q802

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    19995923..20023346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038459072.1 → XP_038315000.1  Hermansky-Pudlak syndrome 4 protein isoform X8

    UniProtKB/TrEMBL
    A0A8C0Z6Z8
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 45
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:591 → 689
    Intu_longin_3; Intu longin-like domain 3

  2. XM_038459070.1 → XP_038314998.1  Hermansky-Pudlak syndrome 4 protein isoform X6

    UniProtKB/TrEMBL
    A0A8C0R5X6, A0A8C0Z6Z8, A0A8P0TG62
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 121
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:605 → 703
    Intu_longin_3; Intu longin-like domain 3

  3. XM_038459066.1 → XP_038314994.1  Hermansky-Pudlak syndrome 4 protein isoform X2

    UniProtKB/TrEMBL
    A0A8P0P7V1, A0A8P0SGI3
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 121
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:639 → 737
    Intu_longin_3; Intu longin-like domain 3

  4. XM_038459074.1 → XP_038315002.1  Hermansky-Pudlak syndrome 4 protein isoform X10

    UniProtKB/TrEMBL
    A0A8C0TX07, A0A8P0P0U9
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:531 → 629
    Intu_longin_3; Intu longin-like domain 3

  5. XM_038459073.1 → XP_038315001.1  Hermansky-Pudlak syndrome 4 protein isoform X9

    UniProtKB/TrEMBL
    A0A8C0Z6Z8
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:571 → 669
    Intu_longin_3; Intu longin-like domain 3

  6. XM_038459069.1 → XP_038314997.1  Hermansky-Pudlak syndrome 4 protein isoform X5

    UniProtKB/TrEMBL
    A0A8C0TX07, A0A8P0P0U9
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:612 → 710
    Intu_longin_3; Intu longin-like domain 3

  7. XM_038459068.1 → XP_038314996.1  Hermansky-Pudlak syndrome 4 protein isoform X4

    UniProtKB/TrEMBL
    A0A8C0Z6Z8
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:618 → 716
    Intu_longin_3; Intu longin-like domain 3

  8. XM_038459067.1 → XP_038314995.1  Hermansky-Pudlak syndrome 4 protein isoform X3

    UniProtKB/TrEMBL
    A0A8P0P7V1
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 710
    Intu_longin_3; Intu longin-like domain 3

  9. XM_038459063.1 → XP_038314991.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8P0P7V1
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 750
    Intu_longin_3; Intu longin-like domain 3

  10. XM_038459064.1 → XP_038314992.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8P0P7V1
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 750
    Intu_longin_3; Intu longin-like domain 3

  11. XM_038459065.1 → XP_038314993.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    UniProtKB/TrEMBL
    A0A8P0P7V1
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 750
    Intu_longin_3; Intu longin-like domain 3

  12. XM_038459071.1 → XP_038314999.1  Hermansky-Pudlak syndrome 4 protein isoform X7

    UniProtKB/TrEMBL
    A0A8P0P7V1
    Conserved Domains (2) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    pfam19033
    Location:652 → 702
    Intu_longin_3; Intu longin-like domain 3

  13. XM_038459076.1 → XP_038315004.1  Hermansky-Pudlak syndrome 4 protein isoform X12

    UniProtKB/TrEMBL
    A0A8I3Q802
    Conserved Domains (1) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4

  14. XM_038459075.1 → XP_038315003.1  Hermansky-Pudlak syndrome 4 protein isoform X11

    UniProtKB/TrEMBL
    A0A8I3Q802
    Conserved Domains (1) summary
    pfam19031
    Location:15 → 134
    Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
Nucleotide Protein
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