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POPDC2 popeye domain containing 2 [ Canis lupus familiaris (dog) ]

Gene ID: 487996, updated on 5-Mar-2024

Summary

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Official Symbol
POPDC2provided by VGNC
Official Full Name
popeye domain containing 2provided by VGNC
Primary source
VGNC:VGNC:56134
See related
Ensembl:ENSCAFG00845017206
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See POPDC2 in Genome Data Viewer
Location:
chromosome: 33
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 33 NC_051837.1 (23513597..23533028, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 33 NC_006615.4 (23306245..23325293, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 33 NC_049254.1 (23921853..23941107, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 33 NC_049293.1 (23316273..23335538, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 33 NC_049774.1 (23352389..23370898, complement)

Chromosome 33 - NC_051837.1Genomic Context describing neighboring genes Neighboring gene CD80 molecule Neighboring gene ADP-ribosylarginine hydrolase Neighboring gene phospholipase A1 member A Neighboring gene uncharacterized LOC119867335 Neighboring gene transcription factor BTF3-like Neighboring gene cytochrome c oxidase copper chaperone COX17 Neighboring gene cilia and flagella associated protein 91

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cAMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: popeye domain-containing protein 2; popeye domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051837.1 Reference ROS_Cfam_1.0

    Range
    23513597..23533028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038445060.1 → XP_038300988.1  popeye domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TSQ2, A0A8I3P414, A0A8P0NQD7
    Related
    ENSCAFP00845023867.1, ENSCAFT00845030433.1
    Conserved Domains (1) summary
    pfam04831
    Location:26 → 251
    Popeye; Popeye protein conserved region

  2. XM_038445061.1 → XP_038300989.1  popeye domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0K039, A0A8C0MZY2, A0A8C0TSQ2, A0A8I3P222, A0A8P0NQD7
    Related
    ENSCAFP00845023991.1, ENSCAFT00845030583.1
    Conserved Domains (1) summary
    pfam04831
    Location:26 → 251
    Popeye; Popeye protein conserved region

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049293.1 Alternate UMICH_Zoey_3.1

    Range
    23316273..23335538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038519319.1 → XP_038375247.1  popeye domain-containing protein 2 isoform X2

    Conserved Domains (1) summary
    pfam04831
    Location:26 → 251
    Popeye; Popeye protein conserved region

  2. XM_038519318.1 → XP_038375246.1  popeye domain-containing protein 2 isoform X1

    Conserved Domains (1) summary
    pfam04831
    Location:26 → 251
    Popeye; Popeye protein conserved region

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049774.1 Alternate UNSW_CanFamBas_1.0

    Range
    23352389..23370898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038647327.1 → XP_038503255.1  LOW QUALITY PROTEIN: popeye domain-containing protein 2 isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049254.1 Alternate UU_Cfam_GSD_1.0

    Range
    23921853..23941107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038582938.1 → XP_038438866.1  popeye domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TSQ2, A0A8I3P414, A0A8P0NQD7
    Conserved Domains (1) summary
    pfam04831
    Location:26 → 251
    Popeye; Popeye protein conserved region

  2. XM_038582939.1 → XP_038438867.1  popeye domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0K039, A0A8C0MZY2, A0A8C0TSQ2, A0A8I3P222, A0A8P0NQD7
    Conserved Domains (1) summary
    pfam04831
    Location:26 → 251
    Popeye; Popeye protein conserved region

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006615.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    23306245..23325293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038462446.1 → XP_038318374.1  popeye domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0K039, A0A8C0MZY2, A0A8C0TSQ2, A0A8I3P222, A0A8P0NQD7
    Conserved Domains (1) summary
    pfam04831
    Location:26 → 251
    Popeye; Popeye protein conserved region

  2. XM_038462445.1 → XP_038318373.1  popeye domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TSQ2, A0A8I3P414, A0A8P0NQD7
    Conserved Domains (1) summary
    pfam04831
    Location:26 → 251
    Popeye; Popeye protein conserved region
Nucleotide Protein
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