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PHF23 PHD finger protein 23 [ Canis lupus familiaris (dog) ]

Gene ID: 489465, updated on 5-Mar-2024

Summary

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Official Symbol
PHF23provided by VGNC
Official Full Name
PHD finger protein 23provided by VGNC
Primary source
VGNC:VGNC:44488
See related
Ensembl:ENSCAFG00845020187
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PHF23 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (32308259..32313378, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (32340941..32346052, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (32409527..32414643, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (32273557..32278662, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (32232584..32237690, complement)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase very long chain Neighboring gene microRNA mir-324 Neighboring gene dishevelled segment polarity protein 2 Neighboring gene GABA type A receptor-associated protein Neighboring gene uncharacterized LOC111095875 Neighboring gene CTD nuclear envelope phosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    32308259..32313378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038665363.1 → XP_038521291.1  PHD finger protein 23 isoform X1

    UniProtKB/TrEMBL
    A0A8C0K8U1, A0A8C0N325, A0A8I3S1K3
    Related
    ENSCAFP00845027846.1, ENSCAFT00845035596.1
    Conserved Domains (1) summary
    cd15631
    Location:341 → 384
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

  2. XM_038665364.1 → XP_038521292.1  PHD finger protein 23 isoform X2

    Conserved Domains (1) summary
    cd15631
    Location:333 → 376
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    32273557..32278662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038475471.1 → XP_038331399.1  PHD finger protein 23 isoform X1

    Conserved Domains (1) summary
    cd15631
    Location:341 → 384
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

  2. XM_038475472.1 → XP_038331400.1  PHD finger protein 23 isoform X2

    Conserved Domains (1) summary
    cd15631
    Location:333 → 376
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    32232584..32237690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038600822.1 → XP_038456750.1  PHD finger protein 23 isoform X1

    Conserved Domains (1) summary
    cd15631
    Location:341 → 384
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

  2. XM_038600823.1 → XP_038456751.1  PHD finger protein 23 isoform X2

    Conserved Domains (1) summary
    cd15631
    Location:333 → 376
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    32409527..32414643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038536639.1 → XP_038392567.1  PHD finger protein 23 isoform X1

    UniProtKB/TrEMBL
    A0A8C0K8U1, A0A8C0N325, A0A8I3S1K3
    Conserved Domains (1) summary
    cd15631
    Location:341 → 384
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

  2. XM_038536640.1 → XP_038392568.1  PHD finger protein 23 isoform X2

    Conserved Domains (1) summary
    cd15631
    Location:333 → 376
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    32340941..32346052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038514768.1 → XP_038370696.1  PHD finger protein 23 isoform X1

    UniProtKB/TrEMBL
    A0A8C0K8U1, A0A8C0N325, A0A8I3S1K3
    Conserved Domains (1) summary
    cd15631
    Location:341 → 384
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)

  2. XM_005619964.4 → XP_005620021.1  PHD finger protein 23 isoform X2

    Conserved Domains (1) summary
    cd15631
    Location:333 → 376
    PHD_PHF23; PHD finger found in PHD finger protein 23 (PHF23)
Nucleotide Protein
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