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LOC489516 heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [ Canis lupus familiaris (dog) ]

Gene ID: 489516, updated on 22-Jan-2024

Summary

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Gene symbol
LOC489516
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 3B1
See related
Ensembl:ENSCAFG00845004082
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
HS3ST3B1
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (38132337..38176171)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (38171554..38213835)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (38241454..38283822)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (38109125..38151407)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (38052765..38095041)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119871857 Neighboring gene ribosomal protein L30 pseudogene Neighboring gene cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119872013

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 3B1
Names
heparan sulfate-glucosamine 3-sulfotransferase 3B1
XP_038331690.1
XP_038392874.1
XP_038457017.1
XP_038521588.1
XP_546635.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    38132337..38176171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038665660.1 → XP_038521588.1  heparan sulfate glucosamine 3-O-sulfotransferase 3B1

    UniProtKB/TrEMBL
    A0A8C0M9E9, A0A8I3MLX8
    Related
    ENSCAFP00845005818.1, ENSCAFT00845007332.1
    Conserved Domains (1) summary
    pfam00685
    Location:137 → 374
    Sulfotransfer_1; Sulfotransferase domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    38109125..38151407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038475762.1 → XP_038331690.1  heparan sulfate glucosamine 3-O-sulfotransferase 3B1

    Conserved Domains (1) summary
    pfam00685
    Location:137 → 374
    Sulfotransfer_1; Sulfotransferase domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    38052765..38095041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038601089.1 → XP_038457017.1  heparan sulfate glucosamine 3-O-sulfotransferase 3B1

    Conserved Domains (1) summary
    pfam00685
    Location:137 → 374
    Sulfotransfer_1; Sulfotransferase domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    38241454..38283822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038536946.1 → XP_038392874.1  heparan sulfate glucosamine 3-O-sulfotransferase 3B1

    UniProtKB/TrEMBL
    A0A8C0M9E9, A0A8I3MLX8
    Conserved Domains (1) summary
    pfam00685
    Location:137 → 374
    Sulfotransfer_1; Sulfotransferase domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    38171554..38213835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_546635.6 → XP_546635.2  heparan sulfate glucosamine 3-O-sulfotransferase 3B1

    UniProtKB/TrEMBL
    A0A8C0M9E9, A0A8I3MLX8
    Conserved Domains (1) summary
    pfam00685
    Location:137 → 374
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
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