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PAGR1 PAXIP1 associated glutamate rich protein 1 [ Canis lupus familiaris (dog) ]

Gene ID: 489939, updated on 5-Mar-2024

Summary

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Official Symbol
PAGR1provided by VGNC
Official Full Name
PAXIP1 associated glutamate rich protein 1provided by VGNC
Primary source
VGNC:VGNC:54053
See related
Ensembl:ENSCAFG00845000827
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
C6H16orf53
Orthologs
human mouse all
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Genomic context

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See PAGR1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (18010362..18013169)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (19453540..19456348)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (18040851..18043658)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (17809861..17812669)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (17725557..17728364)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119872174 Neighboring gene uncharacterized LOC111096251 Neighboring gene MYC associated zinc finger protein Neighboring gene proline rich transmembrane protein 2 Neighboring gene major vault protein Neighboring gene CDP-diacylglycerol--inositol 3-phosphatidyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
PAXIP1-associated glutamate-rich protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    18010362..18013169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038668655.1 → XP_038524583.1  PAXIP1-associated glutamate-rich protein 1

    UniProtKB/TrEMBL
    A0A8C0KZ06, A0A8C0YYY5, A0A8I3MG35
    Related
    ENSCAFP00845001057.1, ENSCAFT00845001370.1
    Conserved Domains (1) summary
    pfam15364
    Location:86 → 218
    PAXIP1_C; PAXIP1-associated-protein-1 C term PTIP binding protein

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    17809861..17812669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038478602.1 → XP_038334530.1  PAXIP1-associated glutamate-rich protein 1

    Conserved Domains (1) summary
    pfam15364
    Location:86 → 218
    PAXIP1_C; PAXIP1-associated-protein-1 C term PTIP binding protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    17725557..17728364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038603925.1 → XP_038459853.1  PAXIP1-associated glutamate-rich protein 1

    Conserved Domains (1) summary
    pfam15364
    Location:86 → 218
    PAXIP1_C; PAXIP1-associated-protein-1 C term PTIP binding protein

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    18040851..18043658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038539850.1 → XP_038395778.1  PAXIP1-associated glutamate-rich protein 1

    UniProtKB/TrEMBL
    A0A8C0KZ06, A0A8C0YYY5, A0A8I3MG35
    Conserved Domains (1) summary
    pfam15364
    Location:86 → 218
    PAXIP1_C; PAXIP1-associated-protein-1 C term PTIP binding protein

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    19453540..19456348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_844063.5 → XP_849156.1  PAXIP1-associated glutamate-rich protein 1

    UniProtKB/TrEMBL
    A0A8C0KZ06, A0A8C0YYY5, A0A8I3MG35
    Conserved Domains (1) summary
    pfam15364
    Location:86 → 218
    PAXIP1_C; PAXIP1-associated-protein-1 C term PTIP binding protein
Nucleotide Protein
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