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PAX9 paired box 9 [ Canis lupus familiaris (dog) ]

Gene ID: 490654, updated on 5-Mar-2024

Summary

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Official Symbol
PAX9provided by VGNC
Official Full Name
paired box 9provided by VGNC
Primary source
VGNC:VGNC:44280
See related
Ensembl:ENSCAFG00845002669
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PAX9 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (15329659..15351686)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (15017315..15039336)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (15384554..15406581)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (15027510..15049518)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (15094578..15116598)

Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene NK2 homeobox 1 Neighboring gene NK2 homeobox 8 Neighboring gene uncharacterized LOC119872844 Neighboring gene uncharacterized LOC119872843 Neighboring gene solute carrier family 25 member 21 Neighboring gene uncharacterized LOC111097003

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-9; LOW QUALITY PROTEIN: paired box protein Pax-9
Names
paired box gene 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051812.1 Reference ROS_Cfam_1.0

    Range
    15329659..15351686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038673471.1 → XP_038529399.1  LOW QUALITY PROTEIN: paired box protein Pax-9 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LCK7
    Related
    ENSCAFP00845003787.1, ENSCAFT00845004737.1
    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049268.1 Alternate UMICH_Zoey_3.1

    Range
    15027510..15049518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038483090.1 → XP_038339018.1  paired box protein Pax-9 isoform X1

    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  2. XM_038483087.1 → XP_038339015.1  paired box protein Pax-9 isoform X2

    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  3. XM_038483091.1 → XP_038339019.1  paired box protein Pax-9 isoform X4

    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  4. XM_038483089.1 → XP_038339017.1  paired box protein Pax-9 isoform X3

    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

    Range
    15094578..15116598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038608660.1 → XP_038464588.1  paired box protein Pax-9 isoform X1

    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  2. XM_038608658.1 → XP_038464586.1  paired box protein Pax-9 isoform X5

    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  3. XM_038608661.1 → XP_038464589.1  paired box protein Pax-9 isoform X7

    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  4. XM_038608659.1 → XP_038464587.1  paired box protein Pax-9 isoform X6

    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

    Range
    15384554..15406581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038544542.1 → XP_038400470.1  paired box protein Pax-9 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LCK7
    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  2. XM_038544540.1 → XP_038400468.1  paired box protein Pax-9 isoform X8

    UniProtKB/TrEMBL
    A0A8C0M6R3, A0A8P0PCX0
    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  3. XM_038544543.1 → XP_038400471.1  paired box protein Pax-9 isoform X10

    UniProtKB/TrEMBL
    A0A8C0TJI2, A0A8I3RQV4, A0A8P0PRN3
    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  4. XM_038544541.1 → XP_038400469.1  paired box protein Pax-9 isoform X9

    UniProtKB/TrEMBL
    A0A8C0LCK7, A0A8C0TG20, A0A8P0NFE7
    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    15017315..15039336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005623336.4 → XP_005623393.2  paired box protein Pax-9 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LCK7
    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  2. XM_022421937.2 → XP_022277645.2  paired box protein Pax-9 isoform X11

    UniProtKB/TrEMBL
    A0A8C0M6R3, A0A8P0PCX0
    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  3. XM_022421939.2 → XP_022277647.2  paired box protein Pax-9 isoform X13

    UniProtKB/TrEMBL
    A0A8C0TJI2, A0A8I3RQV4, A0A8P0PRN3
    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain

  4. XM_022421938.2 → XP_022277646.2  paired box protein Pax-9 isoform X12

    UniProtKB/TrEMBL
    A0A8C0LCK7, A0A8C0TG20, A0A8P0NFE7
    Conserved Domains (1) summary
    cd00131
    Location:6 → 131
    PAX; Paired Box domain
Nucleotide Protein
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