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LOC491028 transcription factor CP2-like protein 1 [ Canis lupus familiaris (dog) ]

Gene ID: 491028, updated on 22-Jan-2024

Summary

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Gene symbol
LOC491028
Gene description
transcription factor CP2-like protein 1
See related
Ensembl:ENSCAFG00845013270
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See LOC491028 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (23925182..23935142, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (22602862..22612815, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (23083661..23093621, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (22696890..22706847, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (22958378..22968332, complement)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119873276 Neighboring gene F-box and leucine rich repeat protein 20 Neighboring gene uncharacterized LOC111097360 Neighboring gene SH3 and cysteine rich domain 2 Neighboring gene ribosomal protein L19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor CP2-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    23925182..23935142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038676622.1 → XP_038532550.1  transcription factor CP2-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3NFQ9, A0A8I3NPG8, A0A8P0NWE5, A0A8P0SKK9
    Related
    ENSCAFP00845018679.1, ENSCAFT00845023795.1
    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_038676623.1 → XP_038532551.1  transcription factor CP2-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I3NPG8, A0A8P0SKK9
    Conserved Domains (2) summary
    pfam04516
    Location:16 → 159
    CP2; CP2 transcription factor
    cl15755
    Location:235 → 300
    SAM_superfamily; SAM (Sterile alpha motif )

  3. XM_038676621.1 → XP_038532549.1  transcription factor CP2-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3NPG8, A0A8P0SKK9
    Related
    ENSCAFP00845018699.1, ENSCAFT00845023819.1
    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

RNA

  1. XR_005432181.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    22696890..22706847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038485673.1 → XP_038341601.1  transcription factor CP2-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_038485674.1 → XP_038341602.1  transcription factor CP2-like protein 1 isoform X3

    Conserved Domains (2) summary
    pfam04516
    Location:16 → 159
    CP2; CP2 transcription factor
    cl15755
    Location:235 → 300
    SAM_superfamily; SAM (Sterile alpha motif )

  3. XM_038485672.1 → XP_038341600.1  transcription factor CP2-like protein 1 isoform X1

    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

RNA

  1. XR_005330695.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    22958378..22968332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038611424.1 → XP_038467352.1  transcription factor CP2-like protein 1 isoform X2

    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_038611425.1 → XP_038467353.1  transcription factor CP2-like protein 1 isoform X3

    Conserved Domains (2) summary
    pfam04516
    Location:16 → 159
    CP2; CP2 transcription factor
    cl15755
    Location:235 → 300
    SAM_superfamily; SAM (Sterile alpha motif )

  3. XM_038611423.1 → XP_038467351.1  transcription factor CP2-like protein 1 isoform X1

    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

RNA

  1. XR_005398850.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    23083661..23093621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038547443.1 → XP_038403371.1  transcription factor CP2-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3NFQ9, A0A8I3NPG8, A0A8P0NWE5, A0A8P0SKK9
    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_038547444.1 → XP_038403372.1  transcription factor CP2-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I3NPG8, A0A8P0SKK9
    Conserved Domains (2) summary
    pfam04516
    Location:16 → 159
    CP2; CP2 transcription factor
    cl15755
    Location:235 → 300
    SAM_superfamily; SAM (Sterile alpha motif )

  3. XM_038547442.1 → XP_038403370.1  transcription factor CP2-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3NPG8, A0A8P0SKK9
    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

RNA

  1. XR_005364425.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22602862..22612815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_548148.8 → XP_548148.4  transcription factor CP2-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3NFQ9, A0A8I3NPG8, A0A8P0NWE5, A0A8P0SKK9
    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_038603949.1 → XP_038459877.1  transcription factor CP2-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I3NPG8, A0A8P0SKK9
    Conserved Domains (2) summary
    pfam04516
    Location:16 → 159
    CP2; CP2 transcription factor
    cl15755
    Location:235 → 300
    SAM_superfamily; SAM (Sterile alpha motif )

  3. XM_005624565.3 → XP_005624622.1  transcription factor CP2-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3NPG8, A0A8P0SKK9
    Conserved Domains (2) summary
    pfam04516
    Location:53 → 244
    CP2; CP2 transcription factor
    cl15755
    Location:320 → 385
    SAM_superfamily; SAM (Sterile alpha motif )

RNA

  1. XR_005395270.1 RNA Sequence

Nucleotide Protein
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