U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

strbp spermatid perinuclear RNA binding protein [ Danio rerio (zebrafish) ]

Gene ID: 557957, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
strbpprovided by ZNC
Official Full Name
spermatid perinuclear RNA binding proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030729-18
See related
Ensembl:ENSDARG00000021455 AllianceGenome:ZFIN:ZDB-GENE-030729-18
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sb:cb627; si:ch211-232m7.1
Summary
Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Predicted to act upstream of or within cell differentiation and spermatogenesis. Is expressed in heart tube; nervous system; neural tube; notochord; and pharyngeal arch 3-7 skeleton. Orthologous to human STRBP (spermatid perinuclear RNA binding protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See strbp in Genome Data Viewer
Location:
chromosome: 10
Exon count:
21
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (9831456..10018168, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (9873503..10059916, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene RAB GTPase activating protein 1 Neighboring gene probable G-protein coupled receptor 21 Neighboring gene SH2 domain containing 3Ca Neighboring gene uncharacterized LOC101884772

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Systematic identification of A-to-I RNA editing in zebrafish development and adult organs. Buchumenski I, et al. Nucleic Acids Res, 2021 May 7. PMID 33872356, Free PMC Article
  2. Reverse genetic analysis of neurogenesis in the zebrafish retina. Pujic Z, et al. Dev Biol, 2006 May 15. PMID 16603149
  3. A live zebrafish-based screening system for human nuclear receptor ligand and cofactor discovery. Tiefenbach J, et al. PLoS One, 2010 Mar 22. PMID 20339547, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables double-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables single-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within spermatogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
spermatid perinuclear RNA-binding protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    9831456..10018168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479269.1 → XP_021334944.1  spermatid perinuclear RNA-binding protein isoform X5

    UniProtKB/TrEMBL
    A0A8M9QCB1
    Conserved Domains (2) summary
    smart00358
    Location:160 → 224
    DSRM; Double-stranded RNA binding motif
    cl02675
    Location:1 → 107
    DZF; DZF domain

  2. XM_021479265.1 → XP_021334940.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A8M2B247
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:403 → 467
    DSRM; Double-stranded RNA binding motif

  3. XM_021479266.1 → XP_021334941.1  spermatid perinuclear RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8M2B2I0
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:402 → 466
    DSRM; Double-stranded RNA binding motif

  4. XM_021479264.1 → XP_021334939.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A8M2B247
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:403 → 467
    DSRM; Double-stranded RNA binding motif

  5. XM_021479268.1 → XP_021334943.1  spermatid perinuclear RNA-binding protein isoform X4

    UniProtKB/TrEMBL
    A0A8M2B2D0
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:402 → 466
    DSRM; Double-stranded RNA binding motif

  6. XM_021479267.1 → XP_021334942.1  spermatid perinuclear RNA-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A8N7TC42, F1QB35, F1R194
    Related
    ENSDARP00000104616.2, ENSDART00000129151.4
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:403 → 467
    DSRM; Double-stranded RNA binding motif

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394771.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    13112..196757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472236.1 → XP_021327911.1  spermatid perinuclear RNA-binding protein isoform X5

    UniProtKB/TrEMBL
    A0A8M9QCB1
    Conserved Domains (2) summary
    smart00358
    Location:160 → 224
    DSRM; Double-stranded RNA binding motif
    cl02675
    Location:1 → 107
    DZF; DZF domain

  2. XM_005155604.4 → XP_005155661.1  spermatid perinuclear RNA-binding protein isoform X1

    See identical proteins and their annotated locations for XP_005155661.1

    UniProtKB/TrEMBL
    A0A8M2B247
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:403 → 467
    DSRM; Double-stranded RNA binding motif

  3. XM_005155605.4 → XP_005155662.1  spermatid perinuclear RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8M2B2I0
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:402 → 466
    DSRM; Double-stranded RNA binding motif

  4. XM_005155603.4 → XP_005155660.1  spermatid perinuclear RNA-binding protein isoform X1

    See identical proteins and their annotated locations for XP_005155660.1

    UniProtKB/TrEMBL
    A0A8M2B247
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:403 → 467
    DSRM; Double-stranded RNA binding motif

  5. XM_005155606.4 → XP_005155663.1  spermatid perinuclear RNA-binding protein isoform X4

    UniProtKB/TrEMBL
    A0A8M2B2D0
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:402 → 466
    DSRM; Double-stranded RNA binding motif

  6. XM_701955.8 → XP_707047.3  spermatid perinuclear RNA-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A8N7TC42, F1QB35, F1R194
    Conserved Domains (2) summary
    smart00572
    Location:97 → 350
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:403 → 467
    DSRM; Double-stranded RNA binding motif
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.