si:ch1073-143l10.2 si:ch1073-143l10.2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch1073-143l10.2provided by ZNC
Official Full Name: si:ch1073-143l10.2provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-863
See related: Ensembl:ENSDARG00000094899 AllianceGenome:ZFIN:ZDB-GENE-030131-863
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb51c12; wu:fb51c12
Summary: Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

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Location:: chromosome: 10

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (22907356..22912246, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (22938055..22942794, complement)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb51c12.x1 (e-PCR)
- UniSTS:203266

fc14e09.x1 (e-PCR)
- UniSTS:203812

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein-membrane adaptor activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in autophagosome assembly	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within autophagosome assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of Atg12-Atg5-Atg16 complex	IBA Inferred from Biological aspect of Ancestor more info
is_active_in autophagosome membrane	IBA Inferred from Biological aspect of Ancestor more info
is_active_in phagophore assembly site membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: autophagy-related protein 16-1; uncharacterized protein LOC565165

Names: autophagy-related protein 16-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386725.1 → NP_001373654.1 uncharacterized protein LOC565165

Status: VALIDATED

Source sequence(s)

CU469521

UniProtKB/TrEMBL

A0A8M3B374, E9QB44

Conserved Domains (1) summary

TIGR02168
Location:79 → 189

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007121.7 Reference GRCz11 Primary Assembly

Range

22907356..22912246 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009305275.3 → XP_009303550.1 autophagy-related protein 16-1

UniProtKB/TrEMBL

E9QB44

Related

ENSDARP00000116613.1, ENSDART00000131992.2

Conserved Domains (1) summary

TIGR02168
Location:79 → 189

SMC_prok_B; chromosome segregation protein SMC, common bacterial type