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CLEC2D C-type lectin domain family 2 member D [ Canis lupus familiaris (dog) ]

Gene ID: 611449, updated on 22-Jan-2024

Summary

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Official Symbol
CLEC2Dprovided by VGNC
Official Full Name
C-type lectin domain family 2 member Dprovided by VGNC
Primary source
VGNC:VGNC:39330
See related
Ensembl:ENSCAFG00845027989
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See CLEC2D in Genome Data Viewer
Location:
chromosome: 27
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (36623848..36664802, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (10306152..10347108)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (9831139..9872121)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (36506704..36547679, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (36534442..36575437, complement)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene CD69 molecule Neighboring gene dnaJ homolog subfamily A member 1-like Neighboring gene killer cell lectin like receptor B1 Neighboring gene ovostatin homolog 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 2 member D; uncharacterized protein CLEC2D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    36623848..36664802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038439047.1 → XP_038294975.1  uncharacterized protein CLEC2D isoform X3

    Conserved Domains (1) summary
    cl02432
    Location:72 → 115
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038439045.1 → XP_038294973.1  C-type lectin domain family 2 member D isoform X1

    UniProtKB/TrEMBL
    A0A8I3S6K0
    Conserved Domains (1) summary
    PHA02642
    Location:84 → 195
    PHA02642; C-type lectin-like protein; Provisional

  3. XM_038439046.1 → XP_038294974.1  C-type lectin domain family 2 member D isoform X2

    UniProtKB/TrEMBL
    A0A8C0K188, A0A8I3S6K0
    Related
    ENSCAFP00845038900.1, ENSCAFT00845049590.1
    Conserved Domains (1) summary
    PHA02642
    Location:79 → 190
    PHA02642; C-type lectin-like protein; Provisional

RNA

  1. XR_005303214.1 RNA Sequence

  2. XR_005303207.1 RNA Sequence

    Related
    ENSCAFT00845049422.1

  3. XR_005303213.1 RNA Sequence

  4. XR_005303208.1 RNA Sequence

  5. XR_005303212.1 RNA Sequence

  6. XR_005303211.1 RNA Sequence

  7. XR_005303210.1 RNA Sequence

  8. XR_005303209.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    36506704..36547679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038513701.1 → XP_038369629.1  uncharacterized protein CLEC2D isoform X3

    Conserved Domains (1) summary
    cl02432
    Location:72 → 115
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038513699.1 → XP_038369627.1  C-type lectin domain family 2 member D isoform X1

    Conserved Domains (1) summary
    PHA02642
    Location:84 → 195
    PHA02642; C-type lectin-like protein; Provisional

  3. XM_038513700.1 → XP_038369628.1  C-type lectin domain family 2 member D isoform X2

    Conserved Domains (1) summary
    PHA02642
    Location:79 → 190
    PHA02642; C-type lectin-like protein; Provisional

RNA

  1. XR_005346334.1 RNA Sequence

  2. XR_005346327.1 RNA Sequence

  3. XR_005346333.1 RNA Sequence

  4. XR_005346328.1 RNA Sequence

  5. XR_005346332.1 RNA Sequence

  6. XR_005346331.1 RNA Sequence

  7. XR_005346330.1 RNA Sequence

  8. XR_005346329.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    36534442..36575437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038641530.1 → XP_038497458.1  uncharacterized protein CLEC2D isoform X3

  2. XM_038641528.1 → XP_038497456.1  C-type lectin domain family 2 member D isoform X1

    Conserved Domains (1) summary
    PHA02642
    Location:84 → 195
    PHA02642; C-type lectin-like protein; Provisional

  3. XM_038641529.1 → XP_038497457.1  C-type lectin domain family 2 member D isoform X2

    Conserved Domains (1) summary
    PHA02642
    Location:79 → 190
    PHA02642; C-type lectin-like protein; Provisional

RNA

  1. XR_005413826.1 RNA Sequence

  2. XR_005413819.1 RNA Sequence

  3. XR_005413825.1 RNA Sequence

  4. XR_005413820.1 RNA Sequence

  5. XR_005413824.1 RNA Sequence

  6. XR_005413823.1 RNA Sequence

  7. XR_005413822.1 RNA Sequence

  8. XR_005413821.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    9831139..9872121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038576752.1 → XP_038432680.1  C-type lectin domain family 2 member D isoform X1

    UniProtKB/TrEMBL
    A0A8I3S6K0
    Conserved Domains (1) summary
    PHA02642
    Location:84 → 195
    PHA02642; C-type lectin-like protein; Provisional

  2. XM_038576753.1 → XP_038432681.1  C-type lectin domain family 2 member D isoform X2

    UniProtKB/TrEMBL
    A0A8C0K188, A0A8I3S6K0
    Conserved Domains (1) summary
    PHA02642
    Location:79 → 190
    PHA02642; C-type lectin-like protein; Provisional

  3. XM_038576754.1 → XP_038432682.1  uncharacterized protein CLEC2D isoform X3

    Conserved Domains (1) summary
    cl02432
    Location:72 → 115
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

RNA

  1. XR_005379829.1 RNA Sequence

  2. XR_005379830.1 RNA Sequence

  3. XR_005379831.1 RNA Sequence

  4. XR_005379828.1 RNA Sequence

  5. XR_005379832.1 RNA Sequence

  6. XR_005379827.1 RNA Sequence

  7. XR_005379833.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    10306152..10347108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022411268.2 → XP_022266976.1  C-type lectin domain family 2 member D isoform X1

    UniProtKB/TrEMBL
    A0A8I3S6K0
    Conserved Domains (1) summary
    PHA02642
    Location:84 → 195
    PHA02642; C-type lectin-like protein; Provisional

  2. XM_005637169.4 → XP_005637226.1  C-type lectin domain family 2 member D isoform X2

    UniProtKB/TrEMBL
    A0A8C0K188, A0A8I3S6K0
    Conserved Domains (1) summary
    PHA02642
    Location:79 → 190
    PHA02642; C-type lectin-like protein; Provisional

  3. XM_038459802.1 → XP_038315730.1  uncharacterized protein CLEC2D isoform X3

    Conserved Domains (1) summary
    cl02432
    Location:72 → 115
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

RNA

  1. XR_005315389.1 RNA Sequence

  2. XR_005315390.1 RNA Sequence

  3. XR_005315391.1 RNA Sequence

  4. XR_002620153.2 RNA Sequence

  5. XR_005315392.1 RNA Sequence

  6. XR_002620152.2 RNA Sequence

  7. XR_002620155.2 RNA Sequence

Nucleotide Protein
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