spag1b sperm associated antigen 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: spag1bprovided by ZNC
Official Full Name: sperm associated antigen 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-061013-512
See related: Ensembl:ENSDARG00000069499 AllianceGenome:ZFIN:ZDB-GENE-061013-512
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:153288
Summary: Predicted to be involved in axonemal dynein complex assembly. Predicted to be active in cytosol. Is expressed in female organism. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 28. Orthologous to human SPAG1 (sperm associated antigen 1). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: all
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Genomic context

Location:: chromosome: 16

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (54632865..54640400, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (54827391..54831410, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC768178

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001077321.1 → NP_001070789.1 uncharacterized protein LOC768178

See identical proteins and their annotated locations for NP_001070789.1

Status: PREDICTED

Source sequence(s)

BC124658

UniProtKB/TrEMBL

Q08BM1

Related

ENSDARP00000091981.5, ENSDART00000101207.5

Conserved Domains (4) summary

sd00006
Location:198 → 222

TPR; TPR repeat [structural motif]

pfam00515
Location:486 → 517

TPR_1; Tetratricopeptide repeat

pfam13414
Location:194 → 258

TPR_11; TPR repeat

pfam13432
Location:233 → 294

TPR_16; Tetratricopeptide repeat