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AT3G63460 transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825521, updated on 15-Feb-2024

Summary

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Gene symbol
AT3G63460
Gene description
transducin family protein / WD-40 repeat family protein
Primary source
Araport:AT3G63460
Locus tag
AT3G63460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SEC31B
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Genomic context

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Location:
chromosome: 3
Exon count:
22
Sequence:
Chromosome: 3; NC_003074.8 (23430623..23437374, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cytokinin oxidase/dehydrogenase 6 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene serine carboxypeptidase-like 40 Neighboring gene ncRNA Neighboring gene ATP binding microtubule motor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis. Liu X, et al. Plant J, 2021 Mar. PMID 33340171
  2. Secretory COPII Protein SEC31B Is Required for Pollen Wall Development. Zhao B, et al. Plant Physiol, 2016 Nov. PMID 27634427, Free PMC Article
  3. Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana. Ibl V, et al. J Proteome Res, 2012 Jan 1. PMID 22010978, Free PMC Article
  4. Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. Zhang Y, et al. Plant Cell, 2008 Jun. PMID 18552200, Free PMC Article
  5. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis.
    Title: COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis.
  2. AtSEC31B plays a vital role in pollen wall development by regulating the secretory pathway of the tapetal cells.
    Title: Secretory COPII Protein SEC31B Is Required for Pollen Wall Development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_001203242.1
NM_116211.3
NM_180693.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
transducin family protein / WD-40 repeat family protein
NP_001190171.1
  • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1).
NP_191905.3
  • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36280 Blast hits to 25623 proteins in 1259 species: Archae - 42; Bacteria - 4996; Metazoa - 13160; Fungi - 7289; Plants - 4519; Viruses - 551; Other Eukaryotes - 5723 (source: NCBI BLink).
NP_851024.1
  • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36264 Blast hits to 25632 proteins in 1258 species: Archae - 42; Bacteria - 5004; Metazoa - 13161; Fungi - 7258; Plants - 4512; Viruses - 551; Other Eukaryotes - 5736 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23430623..23437374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180693.2 → NP_851024.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851024.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L611, Q9LY69
    UniProtKB/TrEMBL
    A0A178VFW0, A0A5S9XND4
    Conserved Domains (7) summary
    COG2319
    Location:32 → 337
    WD40; WD40 repeat [General function prediction only]
    pfam08226
    Location:797 → 871
    DUF1720; Domain of unknown function (DUF1720)
    pfam14179
    Location:812 → 889
    YppG; YppG-like protein
    sd00039
    Location:10 → 63
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:86 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl14807
    Location:568 → 784
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl23782
    Location:843 → 944
    RCR; Chitin synthesis regulation, resistance to Congo red

  2. NM_001203242.1 → NP_001190171.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190171.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFW0, A0A5S9XND4, F4J110
    Conserved Domains (7) summary
    COG2319
    Location:32 → 337
    WD40; WD40 repeat [General function prediction only]
    pfam08226
    Location:787 → 861
    DUF1720; Domain of unknown function (DUF1720)
    pfam14179
    Location:802 → 879
    YppG; YppG-like protein
    sd00039
    Location:10 → 63
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:86 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl14807
    Location:558 → 774
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl23782
    Location:833 → 934
    RCR; Chitin synthesis regulation, resistance to Congo red

  3. NM_116211.3 → NP_191905.3  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191905.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFW0, A0A5S9XND4, F4J109
    Conserved Domains (7) summary
    COG2319
    Location:32 → 337
    WD40; WD40 repeat [General function prediction only]
    pfam08226
    Location:795 → 869
    DUF1720; Domain of unknown function (DUF1720)
    pfam14179
    Location:810 → 887
    YppG; YppG-like protein
    sd00039
    Location:10 → 63
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:86 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl14807
    Location:566 → 782
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl23782
    Location:841 → 942
    RCR; Chitin synthesis regulation, resistance to Congo red
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L611.1

Gene LinkOut

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