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    TRIP12 thyroid hormone receptor interactor 12 [ Homo sapiens (human) ]

    Gene ID: 9320, updated on 9-Jun-2024

    Summary

    Official Symbol
    TRIP12provided by HGNC
    Official Full Name
    thyroid hormone receptor interactor 12provided by HGNC
    Primary source
    HGNC:HGNC:12306
    See related
    Ensembl:ENSG00000153827 MIM:604506; AllianceGenome:HGNC:12306
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ULF; MRD49; TRIPC; TRIP-12
    Summary
    The protein encoded by this gene is an E3 ubiquitin-protein ligase involved in the degradation of the p19ARF/ARF isoform of CDKN2A, a tumor suppressor. The encoded protein also plays a role in the DNA damage response by regulating the stability of USP7, which regulates tumor suppressor p53. [provided by RefSeq, Jan 2017]
    Expression
    Broad expression in testis (RPKM 48.5), thyroid (RPKM 17.6) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See TRIP12 in Genome Data Viewer
    Location:
    2q36.3
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (229763837..229923186, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (230246527..230405874, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (230628553..230787902, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene delta/notch like EGF repeat containing Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC105373923 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230488203-230488702 Neighboring gene RNA, U7 small nuclear 9 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:230579179-230579953 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:230579954-230580727 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230591371-230591872 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:230608102-230608922 Neighboring gene MPRA-validated peak4073 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:230715552-230716230 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:230714872-230715551 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:230765063-230765564 Neighboring gene MPRA-validated peak4074 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17205 Neighboring gene RNA, U6 small nuclear 613, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230785780-230786280 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230786281-230786781 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17206 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230808542-230809042 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:230817679-230818543 Neighboring gene uncharacterized LOC105373924 Neighboring gene RNA, U6 small nuclear 964, pseudogene Neighboring gene F-box protein 36

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    Clark-Baraitser syndrome
    MedGen: C2931130 OMIM: 617752 GeneReviews: Not available
    Compare labs

    Copy number response

    Description
    Copy number response
    Triplosensitivity

    No evidence available (Last evaluated 2018-04-02)

    ClinGen Genome Curation Page
    Haploinsufficency

    Sufficient evidence for dosage pathogenicity (Last evaluated 2018-04-02)

    ClinGen Genome Curation PagePubMed

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ46626, KIAA0045, MGC138849, MGC138850

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables nuclear thyroid hormone receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables ubiquitin protein ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables ubiquitin protein ligase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in DNA repair-dependent chromatin remodeling IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in heterochromatin boundary formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein polyubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein polyubiquitination IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of embryonic development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in ubiquitin-dependent protein catabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in ubiquitin-dependent protein catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    is_active_in nuclear speck IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus HDA PubMed 

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase TRIP12
    Names
    E3 ubiquitin-protein ligase for Arf
    HECT-type E3 ubiquitin transferase TRIP12
    TR-interacting protein 12
    probable E3 ubiquitin-protein ligase TRIP12
    thyroid receptor interacting protein 12
    NP_001271143.1
    NP_001271144.1
    NP_001271145.1
    NP_001335244.1
    NP_001335245.1
    NP_001335246.1
    NP_001335247.1
    NP_001335248.1
    NP_001335249.1
    NP_001335250.1
    NP_001335251.1
    NP_001335252.1
    NP_001335253.1
    NP_001335254.1
    NP_001335255.1
    NP_001335256.1
    NP_001335257.1
    NP_001335258.1
    NP_001335259.1
    NP_001335260.1
    NP_001335261.1
    NP_001335262.1
    NP_001335263.1
    NP_001335264.1
    NP_001335265.1
    NP_004229.1
    XP_005247018.1
    XP_016860772.1
    XP_016860779.1
    XP_047302309.1
    XP_047302310.1
    XP_047302311.1
    XP_047302312.1
    XP_047302314.1
    XP_047302316.1
    XP_047302317.1
    XP_047302318.1
    XP_047302319.1
    XP_047302322.1
    XP_047302324.1
    XP_047302327.1
    XP_047302328.1
    XP_047302329.1
    XP_047302330.1
    XP_047302331.1
    XP_047302332.1
    XP_047302333.1
    XP_047302334.1
    XP_047302335.1
    XP_047302336.1
    XP_047302337.1
    XP_047302338.1
    XP_047302339.1
    XP_047302340.1
    XP_047302341.1
    XP_047302342.1
    XP_047302346.1
    XP_047302351.1
    XP_047302352.1
    XP_047302353.1
    XP_047302354.1
    XP_054200554.1
    XP_054200555.1
    XP_054200556.1
    XP_054200557.1
    XP_054200558.1
    XP_054200559.1
    XP_054200560.1
    XP_054200561.1
    XP_054200562.1
    XP_054200563.1
    XP_054200564.1
    XP_054200565.1
    XP_054200566.1
    XP_054200567.1
    XP_054200568.1
    XP_054200569.1
    XP_054200570.1
    XP_054200571.1
    XP_054200572.1
    XP_054200573.1
    XP_054200574.1
    XP_054200575.1
    XP_054200576.1
    XP_054200577.1
    XP_054200578.1
    XP_054200579.1
    XP_054200580.1
    XP_054200581.1
    XP_054200582.1
    XP_054200583.1
    XP_054200584.1
    XP_054200585.1
    XP_054200586.1
    XP_054200587.1
    XP_054200588.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_053017.1 RefSeqGene

      Range
      6226..164398
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001284214.2NP_001271143.1  E3 ubiquitin-protein ligase TRIP12 isoform a

      See identical proteins and their annotated locations for NP_001271143.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1), as well as variant 5, encodes isoform a.
      Source sequence(s)
      AC093384, BC114556, BM677880, D28476, DB240964
      Consensus CDS
      CCDS63146.1
      UniProtKB/TrEMBL
      C9JLD7
      Related
      ENSP00000373696.4, ENST00000389044.8
      Conserved Domains (4) summary
      cd00078
      Location:16382038
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808846
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    2. NM_001284215.2NP_001271144.1  E3 ubiquitin-protein ligase TRIP12 isoform b

      See identical proteins and their annotated locations for NP_001271144.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2), as well as variant 6, encodes isoform b.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92963.1
      UniProtKB/TrEMBL
      C9JLD7
      Related
      ENSP00000515955.1, ENST00000704580.1
      Conserved Domains (4) summary
      cd00078
      Location:16232023
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:766831
      WWE; WWE domain
      pfam10500
      Location:57191
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:447672
      Arm_3; Atypical Arm repeat
    3. NM_001284216.2NP_001271145.1  E3 ubiquitin-protein ligase TRIP12 isoform d

      See identical proteins and their annotated locations for NP_001271145.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) encodes isoform d.
      Source sequence(s)
      AC093384, BC113891, BM677880, D28476, DB240964
      Consensus CDS
      CCDS63145.1
      UniProtKB/TrEMBL
      C9JLD7
      Related
      ENSP00000373697.3, ENST00000389045.7
      Conserved Domains (3) summary
      smart00119
      Location:13381716
      HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
      cd00078
      Location:13201720
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:463528
      WWE; WWE domain
    4. NM_001348315.2NP_001335244.1  E3 ubiquitin-protein ligase TRIP12 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5), as well as variant 1, encodes isoform a.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS63146.1
      UniProtKB/TrEMBL
      C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16382038
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808846
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    5. NM_001348316.2NP_001335245.1  E3 ubiquitin-protein ligase TRIP12 isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6), as well as variant 2, encodes isoform b.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92963.1
      UniProtKB/TrEMBL
      C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16232023
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:766831
      WWE; WWE domain
      pfam10500
      Location:57191
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:447672
      Arm_3; Atypical Arm repeat
    6. NM_001348317.1NP_001335246.1  E3 ubiquitin-protein ligase TRIP12 isoform e

      Status: REVIEWED

      Description
      Transcript Variant: This variant (7), as well as variant 8, encodes isoform e.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92962.1
      UniProtKB/TrEMBL
      A0A994J4J0, C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16182018
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:766831
      WWE; WWE domain
      pfam10500
      Location:57191
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:447672
      Arm_3; Atypical Arm repeat
    7. NM_001348318.2NP_001335247.1  E3 ubiquitin-protein ligase TRIP12 isoform e

      Status: REVIEWED

      Description
      Transcript Variant: This variant (8), as well as variant 7, encodes isoform e.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92962.1
      UniProtKB/TrEMBL
      A0A994J4J0, C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16182018
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:766831
      WWE; WWE domain
      pfam10500
      Location:57191
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:447672
      Arm_3; Atypical Arm repeat
    8. NM_001348319.1NP_001335248.1  E3 ubiquitin-protein ligase TRIP12 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (9), as well as variant 10, encodes isoform f.
      Source sequence(s)
      AC009973, AC093384, AC105380
      UniProtKB/TrEMBL
      C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16602060
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808873
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    9. NM_001348320.2NP_001335249.1  E3 ubiquitin-protein ligase TRIP12 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (10), as well as variant 9, encodes isoform f.
      Source sequence(s)
      AC009973, AC093384, AC105380
      UniProtKB/TrEMBL
      C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16602060
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808873
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    10. NM_001348321.1NP_001335250.1  E3 ubiquitin-protein ligase TRIP12 isoform g

      Status: REVIEWED

      Description
      Transcript Variant: This variant (11) encodes isoform g.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92964.1
      UniProtKB/TrEMBL
      A0A994J569, C9JLD7
      Related
      ENSP00000515956.1, ENST00000704581.1
      Conserved Domains (4) summary
      cd00078
      Location:16612061
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808874
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    11. NM_001348322.1NP_001335251.1  E3 ubiquitin-protein ligase TRIP12 isoform h

      Status: REVIEWED

      Description
      Transcript Variant: This variant (12), as well as variants 13-17, encodes isoform h.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92966.1
      UniProtKB/TrEMBL
      A0A6Q8PHK0, C9JLD7
      Related
      ENSP00000515952.1, ENST00000704577.1
      Conserved Domains (4) summary
      cd00078
      Location:16652065
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808873
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    12. NM_001348323.3NP_001335252.1  E3 ubiquitin-protein ligase TRIP12 isoform h

      Status: REVIEWED

      Description
      Transcript Variant: This variant (13), as well as variants 12 and 14-17, encodes isoform h.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92966.1
      UniProtKB/TrEMBL
      A0A6Q8PHK0, C9JLD7
      Related
      ENSP00000502713.1, ENST00000675903.1
      Conserved Domains (4) summary
      cd00078
      Location:16652065
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808873
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    13. NM_001348324.2NP_001335253.1  E3 ubiquitin-protein ligase TRIP12 isoform h

      Status: REVIEWED

      Description
      Transcript Variant: This variant (14), as well as variants 12-13 and 15-17, encodes isoform h.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92966.1
      UniProtKB/TrEMBL
      A0A6Q8PHK0, C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16652065
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808873
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    14. NM_001348325.2NP_001335254.1  E3 ubiquitin-protein ligase TRIP12 isoform h

      Status: REVIEWED

      Description
      Transcript Variant: This variant (15), as well as variants 12-14 and 16-17, encodes isoform h.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92966.1
      UniProtKB/TrEMBL
      A0A6Q8PHK0, C9JLD7
      Related
      ENSP00000502768.1, ENST00000675423.1
      Conserved Domains (4) summary
      cd00078
      Location:16652065
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808873
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    15. NM_001348326.2NP_001335255.1  E3 ubiquitin-protein ligase TRIP12 isoform h

      Status: REVIEWED

      Description
      Transcript Variant: This variant (16), as well as variants 12-15 and 17, encodes isoform h.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92966.1
      UniProtKB/TrEMBL
      A0A6Q8PHK0, C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16652065
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808873
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    16. NM_001348327.2NP_001335256.1  E3 ubiquitin-protein ligase TRIP12 isoform h

      Status: REVIEWED

      Description
      Transcript Variant: This variant (17), as well as variants 12-16, encodes isoform h.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92966.1
      UniProtKB/TrEMBL
      A0A6Q8PHK0, C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16652065
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808873
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    17. NM_001348328.1NP_001335257.1  E3 ubiquitin-protein ligase TRIP12 isoform i

      Status: REVIEWED

      Description
      Transcript Variant: This variant (18), as well as variants 19 and 20, encodes the longest isoform (i).
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92965.1
      UniProtKB/TrEMBL
      A0A6Q8PGG9, C9JLD7
      Related
      ENSP00000502271.1, ENST00000675453.1
      Conserved Domains (4) summary
      cd00078
      Location:16662066
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808874
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    18. NM_001348329.2NP_001335258.1  E3 ubiquitin-protein ligase TRIP12 isoform i

      Status: REVIEWED

      Description
      Transcript Variant: This variant (19), as well as variants 18 and 20, encodes the longest isoform (i).
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92965.1
      UniProtKB/TrEMBL
      A0A6Q8PGG9, C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16662066
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808874
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    19. NM_001348330.2NP_001335259.1  E3 ubiquitin-protein ligase TRIP12 isoform i

      Status: REVIEWED

      Description
      Transcript Variant: This variant (20), as well as variants 18 and 19, encodes the longest isoform (i).
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92965.1
      UniProtKB/TrEMBL
      A0A6Q8PGG9, C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16662066
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808874
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    20. NM_001348331.1NP_001335260.1  E3 ubiquitin-protein ligase TRIP12 isoform j

      Status: REVIEWED

      Description
      Transcript Variant: This variant (21) encodes isoform j.
      Source sequence(s)
      AC009973, AC093384, AC105380
      Consensus CDS
      CCDS92961.1
      UniProtKB/TrEMBL
      A0A994J755, C9JLD7
      Related
      ENSP00000515960.1, ENST00000704585.1
      Conserved Domains (4) summary
      cd00078
      Location:15911991
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:766804
      WWE; WWE domain
      pfam10500
      Location:57191
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:447672
      Arm_3; Atypical Arm repeat
    21. NM_001348332.1NP_001335261.1  E3 ubiquitin-protein ligase TRIP12 isoform k

      Status: REVIEWED

      Description
      Transcript Variant: This variant (22) encodes isoform k.
      Source sequence(s)
      AC009973, AC093384, AC105380
      UniProtKB/TrEMBL
      C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16312031
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:779844
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:460685
      Arm_3; Atypical Arm repeat
    22. NM_001348333.1NP_001335262.1  E3 ubiquitin-protein ligase TRIP12 isoform l

      Status: REVIEWED

      Description
      Transcript Variant: This variant (23) encodes isoform l.
      Source sequence(s)
      AC009973, AC093384, AC105380
      UniProtKB/TrEMBL
      C9JLD7
      Conserved Domains (4) summary
      cd00078
      Location:16392039
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:808847
      WWE; WWE domain
      pfam10500
      Location:99233
      SR-25; Nuclear RNA-splicing-associated protein
      cl25709
      Location:489714
      Arm_3; Atypical Arm repeat
    23. NM_001348334.1NP_001335263.1  E3 ubiquitin-protein ligase TRIP12 isoform n

      Status: REVIEWED

      Description
      Transcript Variant: This variant (26) encodes isoform n.
      Source sequence(s)
      AC009973
      UniProtKB/TrEMBL
      A0A994J7J0
    24. NM_001348335.2NP_001335264.1  E3 ubiquitin-protein ligase TRIP12 isoform m

      Status: REVIEWED

      Description
      Transcript Variant: This variant (24), as well as variant 25, encodes isoform m.
      Source sequence(s)
      AC009973
      UniProtKB/TrEMBL
      A0A994J7J0
      Related
      ENSP00000515958.1, ENST00000704583.1
    25. NM_001348336.1NP_001335265.1  E3 ubiquitin-protein ligase TRIP12 isoform m

      Status: REVIEWED

      Description
      Transcript Variant: This variant (25), as well as variant 24, encodes isoform m.
      Source sequence(s)
      AC009973
      UniProtKB/TrEMBL
      A0A994J7J0
      Related
      ENSP00000386388.1, ENST00000409677.5
    26. NM_004238.3NP_004229.1  E3 ubiquitin-protein ligase TRIP12 isoform c

      See identical proteins and their annotated locations for NP_004229.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) encodes isoform c.
      Source sequence(s)
      AC093384, BM677880, D28476, DB240964
      Consensus CDS
      CCDS33391.1
      UniProtKB/Swiss-Prot
      D4HL82, Q14669, Q14CA3, Q14CF1, Q15644, Q53R87, Q53TE7
      UniProtKB/TrEMBL
      C9JLD7
      Related
      ENSP00000283943.4, ENST00000283943.9
      Conserved Domains (3) summary
      smart00119
      Location:16081986
      HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
      cd00078
      Location:15901990
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:760798
      WWE; WWE domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      229763837..229923186 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047446397.1XP_047302353.1  E3 ubiquitin-protein ligase TRIP12 isoform X19

      UniProtKB/TrEMBL
      C9JLD7
    2. XM_047446395.1XP_047302351.1  E3 ubiquitin-protein ligase TRIP12 isoform X18

      UniProtKB/TrEMBL
      C9JLD7
    3. XM_047446390.1XP_047302346.1  E3 ubiquitin-protein ligase TRIP12 isoform X17

      UniProtKB/TrEMBL
      C9JLD7
    4. XM_047446384.1XP_047302340.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

      UniProtKB/TrEMBL
      C9JLD7
    5. XM_047446383.1XP_047302339.1  E3 ubiquitin-protein ligase TRIP12 isoform X15

      UniProtKB/TrEMBL
      C9JLD7
    6. XM_047446381.1XP_047302337.1  E3 ubiquitin-protein ligase TRIP12 isoform X14

      UniProtKB/TrEMBL
      C9JLD7
    7. XM_047446375.1XP_047302331.1  E3 ubiquitin-protein ligase TRIP12 isoform X10

      UniProtKB/TrEMBL
      C9JLD7
    8. XM_005246961.5XP_005247018.1  E3 ubiquitin-protein ligase TRIP12 isoform X9

      See identical proteins and their annotated locations for XP_005247018.1

      UniProtKB/TrEMBL
      C9JLD7
      Conserved Domains (3) summary
      smart00119
      Location:16422020
      HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
      cd00078
      Location:16242024
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam02825
      Location:766832
      WWE; WWE domain
    9. XM_047446379.1XP_047302335.1  E3 ubiquitin-protein ligase TRIP12 isoform X13

      UniProtKB/TrEMBL
      C9JLD7
    10. XM_017005290.3XP_016860779.1  E3 ubiquitin-protein ligase TRIP12 isoform X12

      UniProtKB/TrEMBL
      C9JLD7, H7C1L9
      Related
      ENSP00000400967.2, ENST00000453485.2
    11. XM_047446366.1XP_047302322.1  E3 ubiquitin-protein ligase TRIP12 isoform X6

      UniProtKB/TrEMBL
      C9JLD7
    12. XM_047446373.1XP_047302329.1  E3 ubiquitin-protein ligase TRIP12 isoform X8

      UniProtKB/TrEMBL
      C9JLD7
    13. XM_047446361.1XP_047302317.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

      UniProtKB/TrEMBL
      C9JLD7
    14. XM_017005283.3XP_016860772.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

      UniProtKB/TrEMBL
      C9JLD7
    15. XM_047446398.1XP_047302354.1  E3 ubiquitin-protein ligase TRIP12 isoform X19

      UniProtKB/TrEMBL
      C9JLD7
    16. XM_047446396.1XP_047302352.1  E3 ubiquitin-protein ligase TRIP12 isoform X18

      UniProtKB/TrEMBL
      C9JLD7
    17. XM_047446386.1XP_047302342.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

      UniProtKB/TrEMBL
      C9JLD7
    18. XM_047446382.1XP_047302338.1  E3 ubiquitin-protein ligase TRIP12 isoform X14

      UniProtKB/TrEMBL
      C9JLD7
    19. XM_047446377.1XP_047302333.1  E3 ubiquitin-protein ligase TRIP12 isoform X11

      UniProtKB/TrEMBL
      A0A994J4J0, C9JLD7
      Related
      ENSP00000515953.1, ENST00000704578.1
    20. XM_047446376.1XP_047302332.1  E3 ubiquitin-protein ligase TRIP12 isoform X10

      UniProtKB/TrEMBL
      C9JLD7
    21. XM_047446374.1XP_047302330.1  E3 ubiquitin-protein ligase TRIP12 isoform X9

      UniProtKB/TrEMBL
      C9JLD7
    22. XM_047446363.1XP_047302319.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

      UniProtKB/TrEMBL
      C9JLD7
    23. XM_047446372.1XP_047302328.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

      UniProtKB/TrEMBL
      C9JLD7
    24. XM_047446360.1XP_047302316.1  E3 ubiquitin-protein ligase TRIP12 isoform X4

      UniProtKB/TrEMBL
      C9JLD7
    25. XM_047446353.1XP_047302309.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

      UniProtKB/TrEMBL
      A0A6Q8PGG9, C9JLD7
      Related
      ENSP00000389827.2, ENST00000430954.6
    26. XM_047446385.1XP_047302341.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

      UniProtKB/TrEMBL
      C9JLD7
    27. XM_047446358.1XP_047302314.1  E3 ubiquitin-protein ligase TRIP12 isoform X4

      UniProtKB/TrEMBL
      C9JLD7
    28. XM_047446356.1XP_047302312.1  E3 ubiquitin-protein ligase TRIP12 isoform X3

      UniProtKB/TrEMBL
      C9JLD7
    29. XM_047446354.1XP_047302310.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

      UniProtKB/TrEMBL
      A0A6Q8PGG9, C9JLD7
    30. XM_047446380.1XP_047302336.1  E3 ubiquitin-protein ligase TRIP12 isoform X13

      UniProtKB/TrEMBL
      C9JLD7
    31. XM_047446378.1XP_047302334.1  E3 ubiquitin-protein ligase TRIP12 isoform X12

      UniProtKB/TrEMBL
      C9JLD7, H7C1L9
    32. XM_047446368.1XP_047302324.1  E3 ubiquitin-protein ligase TRIP12 isoform X6

      UniProtKB/TrEMBL
      C9JLD7
    33. XM_047446362.1XP_047302318.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

      UniProtKB/TrEMBL
      C9JLD7
    34. XM_047446371.1XP_047302327.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

      UniProtKB/TrEMBL
      C9JLD7
    35. XM_047446355.1XP_047302311.1  E3 ubiquitin-protein ligase TRIP12 isoform X2

      UniProtKB/TrEMBL
      A0A994J569, C9JLD7

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      230246527..230405874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054344612.1XP_054200587.1  E3 ubiquitin-protein ligase TRIP12 isoform X19

      UniProtKB/TrEMBL
      C9JLD7
    2. XM_054344610.1XP_054200585.1  E3 ubiquitin-protein ligase TRIP12 isoform X18

      UniProtKB/TrEMBL
      C9JLD7
    3. XM_054344609.1XP_054200584.1  E3 ubiquitin-protein ligase TRIP12 isoform X17

      UniProtKB/TrEMBL
      C9JLD7
    4. XM_054344606.1XP_054200581.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

      UniProtKB/TrEMBL
      C9JLD7
    5. XM_054344605.1XP_054200580.1  E3 ubiquitin-protein ligase TRIP12 isoform X15

      UniProtKB/TrEMBL
      C9JLD7
    6. XM_054344603.1XP_054200578.1  E3 ubiquitin-protein ligase TRIP12 isoform X14

      UniProtKB/TrEMBL
      C9JLD7
    7. XM_054344596.1XP_054200571.1  E3 ubiquitin-protein ligase TRIP12 isoform X10

      UniProtKB/TrEMBL
      C9JLD7
    8. XM_054344594.1XP_054200569.1  E3 ubiquitin-protein ligase TRIP12 isoform X9

      UniProtKB/TrEMBL
      C9JLD7
    9. XM_054344601.1XP_054200576.1  E3 ubiquitin-protein ligase TRIP12 isoform X13

      UniProtKB/TrEMBL
      C9JLD7
    10. XM_054344600.1XP_054200575.1  E3 ubiquitin-protein ligase TRIP12 isoform X12

      UniProtKB/TrEMBL
      C9JLD7, H7C1L9
    11. XM_054344588.1XP_054200563.1  E3 ubiquitin-protein ligase TRIP12 isoform X6

      UniProtKB/TrEMBL
      C9JLD7
    12. XM_054344593.1XP_054200568.1  E3 ubiquitin-protein ligase TRIP12 isoform X8

      UniProtKB/TrEMBL
      C9JLD7
    13. XM_054344585.1XP_054200560.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

      UniProtKB/TrEMBL
      C9JLD7
    14. XM_054344590.1XP_054200565.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

      UniProtKB/TrEMBL
      C9JLD7
    15. XM_054344613.1XP_054200588.1  E3 ubiquitin-protein ligase TRIP12 isoform X19

      UniProtKB/TrEMBL
      C9JLD7
    16. XM_054344611.1XP_054200586.1  E3 ubiquitin-protein ligase TRIP12 isoform X18

      UniProtKB/TrEMBL
      C9JLD7
    17. XM_054344608.1XP_054200583.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

      UniProtKB/TrEMBL
      C9JLD7
    18. XM_054344604.1XP_054200579.1  E3 ubiquitin-protein ligase TRIP12 isoform X14

      UniProtKB/TrEMBL
      C9JLD7
    19. XM_054344598.1XP_054200573.1  E3 ubiquitin-protein ligase TRIP12 isoform X11

      UniProtKB/TrEMBL
      A0A994J4J0, C9JLD7
    20. XM_054344597.1XP_054200572.1  E3 ubiquitin-protein ligase TRIP12 isoform X10

      UniProtKB/TrEMBL
      C9JLD7
    21. XM_054344595.1XP_054200570.1  E3 ubiquitin-protein ligase TRIP12 isoform X9

      UniProtKB/TrEMBL
      C9JLD7
    22. XM_054344587.1XP_054200562.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

      UniProtKB/TrEMBL
      C9JLD7
    23. XM_054344592.1XP_054200567.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

      UniProtKB/TrEMBL
      C9JLD7
    24. XM_054344584.1XP_054200559.1  E3 ubiquitin-protein ligase TRIP12 isoform X4

      UniProtKB/TrEMBL
      C9JLD7
    25. XM_054344579.1XP_054200554.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

      UniProtKB/TrEMBL
      A0A6Q8PGG9, C9JLD7
    26. XM_054344607.1XP_054200582.1  E3 ubiquitin-protein ligase TRIP12 isoform X16

      UniProtKB/TrEMBL
      C9JLD7
    27. XM_054344583.1XP_054200558.1  E3 ubiquitin-protein ligase TRIP12 isoform X4

      UniProtKB/TrEMBL
      C9JLD7
    28. XM_054344582.1XP_054200557.1  E3 ubiquitin-protein ligase TRIP12 isoform X3

      UniProtKB/TrEMBL
      C9JLD7
    29. XM_054344580.1XP_054200555.1  E3 ubiquitin-protein ligase TRIP12 isoform X1

      UniProtKB/TrEMBL
      A0A6Q8PGG9, C9JLD7
    30. XM_054344602.1XP_054200577.1  E3 ubiquitin-protein ligase TRIP12 isoform X13

      UniProtKB/TrEMBL
      C9JLD7
    31. XM_054344599.1XP_054200574.1  E3 ubiquitin-protein ligase TRIP12 isoform X12

      UniProtKB/TrEMBL
      C9JLD7, H7C1L9
    32. XM_054344589.1XP_054200564.1  E3 ubiquitin-protein ligase TRIP12 isoform X6

      UniProtKB/TrEMBL
      C9JLD7
    33. XM_054344586.1XP_054200561.1  E3 ubiquitin-protein ligase TRIP12 isoform X5

      UniProtKB/TrEMBL
      C9JLD7
    34. XM_054344591.1XP_054200566.1  E3 ubiquitin-protein ligase TRIP12 isoform X7

      UniProtKB/TrEMBL
      C9JLD7
    35. XM_054344581.1XP_054200556.1  E3 ubiquitin-protein ligase TRIP12 isoform X2

      UniProtKB/TrEMBL
      A0A994J569, C9JLD7