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    Mfsd9 major facilitator superfamily domain containing 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 316356, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Mfsd9provided by RGD
    Official Full Name
    major facilitator superfamily domain containing 9provided by RGD
    Primary source
    RGD:1562212
    See related
    Ensembl:ENSRNOG00000023129 AllianceGenome:RGD:1562212
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562212
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Orthologous to human MFSD9 (major facilitator superfamily domain containing 9). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 45.1), Liver (RPKM 38.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    9q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (50515209..50534698, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (43019611..43039100, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (47496977..47516474, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480287 Neighboring gene uncharacterized LOC103690525 Neighboring gene solute carrier family 9 member A2 Neighboring gene transmembrane protein 182 Neighboring gene uncharacterized LOC120094676

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    major facilitator superfamily domain-containing protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108215.1 → NP_001101685.1  major facilitator superfamily domain-containing protein 9

      See identical proteins and their annotated locations for NP_001101685.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473965
      UniProtKB/TrEMBL
      A6INP5
      Conserved Domains (2) summary
      cd06174
      Location:36 → 452
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:39 → 419
      MFS_1; Major Facilitator Superfamily

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      50515209..50534698 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006244824.5 → XP_006244886.1  major facilitator superfamily domain-containing protein 9 isoform X2

      UniProtKB/TrEMBL
      D3ZTY6
      Related
      ENSRNOP00000032132.5
      Conserved Domains (2) summary
      cd06174
      Location:1 → 408
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:4 → 375
      MFS_1; Major Facilitator Superfamily

    2. XM_006244823.5 → XP_006244885.1  major facilitator superfamily domain-containing protein 9 isoform X1

      Conserved Domains (2) summary
      cd06174
      Location:41 → 448
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:41 → 415
      MFS_1; Major Facilitator Superfamily

    3. XM_039083589.2 → XP_038939517.1  major facilitator superfamily domain-containing protein 9 isoform X4

      Conserved Domains (1) summary
      cl28910
      Location:80 → 261
      MFS; Major Facilitator Superfamily

    4. XM_039083588.2 → XP_038939516.1  major facilitator superfamily domain-containing protein 9 isoform X3

      Conserved Domains (1) summary
      cl28910
      Location:1 → 336
      MFS; Major Facilitator Superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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