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    LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated [ Canis lupus familiaris (dog) ]

    Gene ID: 607248, updated on 5-Mar-2024

    Summary

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    Official Symbol
    LSM3provided by VGNC
    Official Full Name
    LSM3 homolog, U6 small nuclear RNA and mRNA degradation associatedprovided by VGNC
    Primary source
    VGNC:VGNC:42843
    See related
    Ensembl:ENSCAFG00845024243
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See LSM3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (4350284..4364092)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (4366825..4380622)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (4356498..4370300)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (4069769..4083561)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (4392051..4405847)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 43 Neighboring gene XPC complex subunit, DNA damage recognition and repair factor Neighboring gene uncharacterized LOC102152894 Neighboring gene uncharacterized LOC111091229

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in P-body assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm3
    Names
    LSM3 homolog, U6 small nuclear RNA associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      4350284..4364092
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038426827.1 → XP_038282755.1  U6 snRNA-associated Sm-like protein LSm3

      UniProtKB/TrEMBL
      A0A8C0SY27, A0A8C0T7J3, A0A8I3PR17
      Related
      ENSCAFP00845033551.1, ENSCAFT00845042799.1
      Conserved Domains (1) summary
      cd01730
      Location:16 → 97
      LSm3; Like-Sm protein 3

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      4069769..4083561
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038502623.1 → XP_038358551.1  U6 snRNA-associated Sm-like protein LSm3

      Conserved Domains (1) summary
      cd01730
      Location:16 → 97
      LSm3; Like-Sm protein 3

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      4392051..4405847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038629670.1 → XP_038485598.1  U6 snRNA-associated Sm-like protein LSm3

      Conserved Domains (1) summary
      cd01730
      Location:16 → 97
      LSm3; Like-Sm protein 3

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      4356498..4370300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038565536.1 → XP_038421464.1  U6 snRNA-associated Sm-like protein LSm3

      UniProtKB/TrEMBL
      A0A8C0SY27, A0A8C0T7J3, A0A8I3PR17
      Conserved Domains (1) summary
      cd01730
      Location:16 → 97
      LSm3; Like-Sm protein 3

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      4366825..4380622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_844182.4 → XP_849275.1  U6 snRNA-associated Sm-like protein LSm3

      See identical proteins and their annotated locations for XP_849275.1

      UniProtKB/TrEMBL
      A0A8C0SY27, A0A8C0T7J3, A0A8I3PR17
      Conserved Domains (1) summary
      cd01730
      Location:16 → 97
      LSm3; Like-Sm protein 3
    Nucleotide Protein
    Heading Accession and Version

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