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    HOXA4 homeobox A4 [ Canis lupus familiaris (dog) ]

    Gene ID: 482369, updated on 5-Mar-2024

    Summary

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    Official Symbol
    HOXA4provided by VGNC
    Official Full Name
    homeobox A4provided by VGNC
    Primary source
    VGNC:VGNC:41748
    See related
    Ensembl:ENSCAFG00845011344
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See HOXA4 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (40240879..40243161, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (39733161..39735443, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (40398629..40400911, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (40354968..40357250, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (40040052..40042332, complement)

    Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866384 Neighboring gene homeobox A2 Neighboring gene homeobox A3 Neighboring gene uncharacterized LOC119866382 Neighboring gene homeobox A5 Neighboring gene uncharacterized LOC119866379 Neighboring gene homeobox A6 Neighboring gene homeobox A7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Construction and characterization of an eightfold redundant dog genomic bacterial artificial chromosome library. Li R, et al. Genomics, 1999 May 15. PMID 10331940

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic skeletal system morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-A4; LOW QUALITY PROTEIN: homeobox protein Hox-A4
    Names
    Hoxa
    homeo box A4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051818.1 Reference ROS_Cfam_1.0

      Range
      40240879..40243161 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038686797.1 → XP_038542725.1  homeobox protein Hox-A4

      UniProtKB/TrEMBL
      A0A8C0JSA1, A0A8C0S465, A0A8I3N8X5
      Related
      ENSCAFP00845015752.1, ENSCAFT00845020100.1
      Conserved Domains (1) summary
      pfam00046
      Location:215 → 269
      Homeobox; Homeobox domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049274.1 Alternate UMICH_Zoey_3.1

      Range
      40354968..40357250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038494906.1 → XP_038350834.1  homeobox protein Hox-A4

      Conserved Domains (1) summary
      pfam00046
      Location:215 → 269
      Homeobox; Homeobox domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

      Range
      40040052..40042332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038621120.1 → XP_038477048.1  LOW QUALITY PROTEIN: homeobox protein Hox-A4

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

      Range
      40398629..40400911 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038557180.1 → XP_038413108.1  homeobox protein Hox-A4

      UniProtKB/TrEMBL
      A0A8C0JSA1, A0A8C0S465, A0A8I3N8X5
      Conserved Domains (1) summary
      pfam00046
      Location:215 → 269
      Homeobox; Homeobox domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      39733161..39735443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_539486.7 → XP_539486.3  homeobox protein Hox-A4

      UniProtKB/TrEMBL
      A0A8C0JSA1, A0A8C0S465, A0A8I3N8X5
      Conserved Domains (1) summary
      pfam00046
      Location:215 → 269
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials