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    ALMS1 ALMS1 centrosome and basal body associated protein [ Canis lupus familiaris (dog) ]

    Gene ID: 475795, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ALMS1provided by VGNC
    Official Full Name
    ALMS1 centrosome and basal body associated proteinprovided by VGNC
    Primary source
    VGNC:VGNC:54917
    See related
    Ensembl:ENSCAFG00845017265
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ALMS1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (50163595..50379703, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (48945100..49160487, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (49806151..50021717, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (49179726..49395827, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (49247116..49462601, complement)

    Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111090661 Neighboring gene N-acetyltransferase 8 (putative) Neighboring gene U1 small nuclear ribonucleoprotein C-like Neighboring gene E2F-associated phosphoprotein-like Neighboring gene uncharacterized LOC111090441 Neighboring gene early growth response 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of centriole replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centriole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Alstrom syndrome protein 1
    Names
    Alstrom syndrome 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051821.1 Reference ROS_Cfam_1.0

      Range
      50163595..50379703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038691719.1 → XP_038547647.1  Alstrom syndrome protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P378
      Related
      ENSCAFP00845023965.1, ENSCAFT00845030547.1
      Conserved Domains (2) summary
      pfam18727
      Location:2353 → 2399
      ALMS_repeat; Alstrom syndrome repeat
      pfam15309
      Location:4638 → 4769
      ALMS_motif; ALMS motif

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049277.1 Alternate UMICH_Zoey_3.1

      Range
      49179726..49395827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038499160.1 → XP_038355088.1  Alstrom syndrome protein 1 isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

      Range
      49247116..49462601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038625791.1 → XP_038481719.1  Alstrom syndrome protein 1 isoform X3

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

      Range
      49806151..50021717 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038561747.1 → XP_038417675.1  Alstrom syndrome protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0P378

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      48945100..49160487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038453409.1 → XP_038309337.1  Alstrom syndrome protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8C0P378
      Conserved Domains (2) summary
      pfam18727
      Location:2448 → 2493
      ALMS_repeat; Alstrom syndrome repeat
      pfam15309
      Location:4779 → 4910
      ALMS_motif; ALMS motif
    Nucleotide Protein
    Heading Accession and Version

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