U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TPM2 tropomyosin 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 481598, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TPM2provided by VGNC
    Official Full Name
    tropomyosin 2provided by VGNC
    Primary source
    VGNC:VGNC:47742
    See related
    Ensembl:ENSCAFG00845009024
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (53277326..53284901, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (50779956..50787531, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (52507526..52515101, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (51821901..51829478, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (51805386..51812960, complement)

    Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 39 Neighboring gene coiled-coil domain containing 107 Neighboring gene carbonic anhydrase 9 Neighboring gene talin 1 Neighboring gene uncharacterized LOC119873942 Neighboring gene cAMP responsive element binding protein 3 Neighboring gene glucosylceramidase beta 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Nucleotide and protein sequences for dog masticatory tropomyosin identify a novel Tpm4 gene product. Brundage EA, et al. J Muscle Res Cell Motil, 2015 Oct. PMID 26400443, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tropomyosin beta chain
    Names
    tropomyosin 2 (beta)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051815.1 Reference ROS_Cfam_1.0

      Range
      53277326..53284901 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038682106.1 → XP_038538034.1  tropomyosin beta chain isoform X3

      UniProtKB/TrEMBL
      A0A8C0KXW3, A0A8C0MXG3, A0A8I3N002
      Related
      ENSCAFP00845012385.1, ENSCAFT00845015916.1
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    2. XM_038682104.1 → XP_038538032.1  tropomyosin beta chain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KYP2, A0A8C0N3P5, A0A8I3NAC0
      Related
      ENSCAFP00845012425.1, ENSCAFT00845015972.1
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    3. XM_038682107.1 → XP_038538035.1  tropomyosin beta chain isoform X4

      UniProtKB/TrEMBL
      A0A8C0N098, E2RAH4
      Related
      ENSCAFP00845012604.1, ENSCAFT00845016203.1
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    4. XM_038682105.1 → XP_038538033.1  tropomyosin beta chain isoform X2

      UniProtKB/TrEMBL
      A0A8C0KXY3, A0A8I3RWJ7
      Related
      ENSCAFP00845012466.1, ENSCAFT00845016031.1
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049271.1 Alternate UMICH_Zoey_3.1

      Range
      51821901..51829478 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038490658.1 → XP_038346586.1  tropomyosin beta chain isoform X3

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    2. XM_038490655.1 → XP_038346583.1  tropomyosin beta chain isoform X1

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    3. XM_038490659.1 → XP_038346587.1  tropomyosin beta chain isoform X4

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    4. XM_038490657.1 → XP_038346585.1  tropomyosin beta chain isoform X2

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

      Range
      51805386..51812960 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038616637.1 → XP_038472565.1  tropomyosin beta chain isoform X3

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    2. XM_038616635.1 → XP_038472563.1  tropomyosin beta chain isoform X1

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    3. XM_038616638.1 → XP_038472566.1  tropomyosin beta chain isoform X4

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    4. XM_038616636.1 → XP_038472564.1  tropomyosin beta chain isoform X2

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

      Range
      52507526..52515101 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038552778.1 → XP_038408706.1  tropomyosin beta chain isoform X3

      UniProtKB/TrEMBL
      A0A8C0KXW3, A0A8C0MXG3, A0A8I3N002
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    2. XM_038552776.1 → XP_038408704.1  tropomyosin beta chain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KYP2, A0A8C0N3P5, A0A8I3NAC0
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    3. XM_038552779.1 → XP_038408707.1  tropomyosin beta chain isoform X4

      UniProtKB/TrEMBL
      A0A8C0N098, E2RAH4
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    4. XM_038552777.1 → XP_038408705.1  tropomyosin beta chain isoform X2

      UniProtKB/TrEMBL
      A0A8C0KXY3, A0A8I3RWJ7
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      50779956..50787531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_861479.3 → XP_866572.1  tropomyosin beta chain isoform X3

      See identical proteins and their annotated locations for XP_866572.1

      UniProtKB/TrEMBL
      A0A8C0KXW3, A0A8C0MXG3, A0A8I3N002
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    2. XM_538720.4 → XP_538720.2  tropomyosin beta chain isoform X1

      See identical proteins and their annotated locations for XP_538720.2

      UniProtKB/TrEMBL
      A0A8C0KYP2, A0A8C0N3P5, A0A8I3NAC0
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    3. XM_847850.4 → XP_852943.1  tropomyosin beta chain isoform X4

      See identical proteins and their annotated locations for XP_852943.1

      UniProtKB/TrEMBL
      A0A8C0N098, E2RAH4
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    4. XM_861343.4 → XP_866436.1  tropomyosin beta chain isoform X2

      See identical proteins and their annotated locations for XP_866436.1

      UniProtKB/TrEMBL
      A0A8C0KXY3, A0A8I3RWJ7
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.