RPUSD3 RNA pseudouridine synthase D3 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: RPUSD3provided by VGNC
Official Full Name: RNA pseudouridine synthase D3provided by VGNC
Primary source: VGNC:VGNC:45753
See related: Ensembl:ENSCAFG00845008938
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 20

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	20	NC_051824.1 (8435847..8443342)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	20	NC_006602.4 (8439750..8447246)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	20	NC_049241.1 (8476434..8483929)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	20	NC_049280.1 (8158326..8165808)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	20	NC_049761.1 (8503012..8510489)

Chromosome 20 - NC_051824.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables pseudouridine synthase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in pseudouridine synthesis	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: mitochondrial mRNA pseudouridine synthase RPUSD3

Names: RNA pseudouridylate synthase domain containing 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051824.1 Reference ROS_Cfam_1.0

Range

8435847..8443342

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038427009.1 → XP_038282937.1 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X2

Conserved Domains (1) summary

cl00130
Location:91 → 205

PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
XM_038427008.1 → XP_038282936.1 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X1

UniProtKB/TrEMBL

A0A8C0K6C6, A0A8C0MKY2, A0A8C0MMU9, A0A8I3N783

Related

ENSCAFP00845012240.1, ENSCAFT00845015734.1

Conserved Domains (1) summary

cd02869
Location:91 → 276

PseudoU_synth_RluA_like; Pseudouridine synthase, RluA family

Alternate UMICH_Zoey_3.1

Genomic

NC_049280.1 Alternate UMICH_Zoey_3.1

Range

8158326..8165808

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038502802.1 → XP_038358730.1 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X1

Conserved Domains (1) summary

cd02869
Location:91 → 276

PseudoU_synth_RluA_like; Pseudouridine synthase, RluA family
XM_038502803.1 → XP_038358731.1 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X2

Conserved Domains (1) summary

cl00130
Location:91 → 205

PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049761.1 Alternate UNSW_CanFamBas_1.0

Range

8503012..8510489

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038629849.1 → XP_038485777.1 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X1
XM_038629850.1 → XP_038485778.1 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049241.1 Alternate UU_Cfam_GSD_1.0

Range

8476434..8483929

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038565725.1 → XP_038421653.1 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X2

Conserved Domains (1) summary

cl00130
Location:91 → 205

PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
XM_038565724.1 → XP_038421652.1 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X1

UniProtKB/TrEMBL

A0A8C0K6C6, A0A8C0MKY2, A0A8C0MMU9, A0A8I3N783

Conserved Domains (1) summary

cd02869
Location:91 → 276

PseudoU_synth_RluA_like; Pseudouridine synthase, RluA family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

8439750..8447246

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_022406398.2 → XP_022262106.1 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X2

Conserved Domains (1) summary

cl00130
Location:91 → 205

PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
XM_541778.6 → XP_541778.3 mitochondrial mRNA pseudouridine synthase RPUSD3 isoform X1

UniProtKB/TrEMBL

A0A8C0K6C6, A0A8C0MKY2, A0A8C0MMU9, A0A8I3N783

Conserved Domains (1) summary

cd02869
Location:91 → 276

PseudoU_synth_RluA_like; Pseudouridine synthase, RluA family