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    nfe2.S nuclear factor, erythroid 2 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 495834, updated on 11-Apr-2024

    Summary

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    Official Symbol
    nfe2.S
    Official Full Name
    nuclear factor, erythroid 2 S homeolog
    Primary source
    Xenbase:XB-GENE-865028
    Locus tag
    XELAEV_18016013mg
    See related
    EnsemblRapid:ENSXLAG00005031213
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    nfe2
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    Genomic context

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    See nfe2.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (137217165..137229957)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (128215720..128228508)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 84 S homeolog Neighboring gene COPI coat complex subunit zeta 1 S homeolog Neighboring gene heterogeneous nuclear ribonucleoprotein A1 S homeolog Neighboring gene chromobox 5 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor, erythroid 2 S homeolog
    Names
    nuclear factor (erythroid-derived 2), 45kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001095191.1 → NP_001088660.1  nuclear factor, erythroid 2 S homeolog

      See identical proteins and their annotated locations for NP_001088660.1

      Status: PROVISIONAL

      Source sequence(s)
      BC086473
      UniProtKB/TrEMBL
      Q5RJW8
      Related
      ENSXLAP00005093484.1, ENSXLAT00005095169.1
      Conserved Domains (2) summary
      COG1579
      Location:160 → 305
      COG1579; Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]
      cd14720
      Location:253 → 320
      bZIP_NFE2-like; Basic leucine zipper (bZIP) domain of Nuclear Factor, Erythroid-derived 2 (NFE2) and similar proteins: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      137217165..137229957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041583216.1 → XP_041439150.1  nuclear factor, erythroid 2 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8HA76, A0A974DLH1
      Conserved Domains (2) summary
      COG1579
      Location:187 → 332
      COG1579; Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]
      cd14720
      Location:280 → 347
      bZIP_NFE2-like; Basic leucine zipper (bZIP) domain of Nuclear Factor, Erythroid-derived 2 (NFE2) and similar proteins: a DNA-binding and dimerization domain
    Nucleotide Protein Strain
    Heading Accession and Version

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