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    acbp-5 Acyl-CoA-binding domain-containing protein 6 [ Caenorhabditis elegans ]

    Gene ID: 176800, updated on 12-Jun-2024

    Summary

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    Gene symbol
    acbp-5
    Gene description
    Acyl-CoA-binding domain-containing protein 6
    Locus tag
    CELE_T12D8.3
    See related
    AllianceGenome:WB:WBGene00011731
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable fatty-acyl-CoA binding activity. Is expressed in intestine and pharynx. Orthologous to human ACBD6 (acyl-CoA binding domain containing 6). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See acbp-5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    5
    Sequence:
    Chromosome: III; NC_003281.10 (13639893..13641688, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene BolA family protein Neighboring gene Serine/arginine-rich splicing factor 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables fatty-acyl-CoA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables fatty-acyl-CoA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Acyl-CoA-binding domain-containing protein 6
    NP_499817.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      13639893..13641688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067416.7 → NP_499817.2  Acyl-CoA-binding domain-containing protein 6 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499817.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XVJ0
      Conserved Domains (4) summary
      cd00204
      Location:161 → 272
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam00887
      Location:29 → 108
      ACBP; Acyl CoA binding protein
      pfam12796
      Location:160 → 253
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:188 → 220
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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