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    SEC31B SEC31 homolog B, COPII coat complex component [ Bos taurus (cattle) ]

    Gene ID: 507880, updated on 6-Jun-2024

    Summary

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    Official Symbol
    SEC31Bprovided by VGNC
    Official Full Name
    SEC31 homolog B, COPII coat complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:34418
    See related
    Ensembl:ENSBTAG00000000090
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SEC31B in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (21378222..21412025, complement)

    Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-12016 Neighboring gene Wnt family member 8B Neighboring gene NADH:ubiquinone oxidoreductase subunit B8 Neighboring gene hypoxia inducible factor 1 subunit alpha inhibitor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle cargo loading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein transport protein Sec31B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192161.2 → NP_001179090.1  protein transport protein Sec31B

      See identical proteins and their annotated locations for NP_001179090.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000026
      UniProtKB/TrEMBL
      E1BLS3
      Conserved Domains (5) summary
      COG2319
      Location:31 → 356
      WD40; WD40 repeat [General function prediction only]
      pfam04503
      Location:786 → 1051
      SSDP; Single-stranded DNA binding protein, SSDP
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 332
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:571 → 651
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      21378222..21412025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015460651.3 → XP_015316137.1  protein transport protein Sec31B isoform X6

      UniProtKB/TrEMBL
      A0A3Q1LL46, A0A3Q1M1L0
      Related
      ENSBTAP00000057175.2, ENSBTAT00000084375.2
      Conserved Domains (4) summary
      COG2319
      Location:31 → 356
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 332
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:571 → 651
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    2. XM_059881812.1 → XP_059737795.1  protein transport protein Sec31B isoform X14

      UniProtKB/TrEMBL
      E1BLS3

    3. XM_010819860.4 → XP_010818162.1  protein transport protein Sec31B isoform X3

      UniProtKB/TrEMBL
      E1BLS3
      Related
      ENSBTAP00000000099.6, ENSBTAT00000000099.7
      Conserved Domains (4) summary
      COG2319
      Location:31 → 356
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 332
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:571 → 651
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    4. XM_059881807.1 → XP_059737790.1  protein transport protein Sec31B isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M1L0, A0AAA9SFZ0

    5. XM_010819850.4 → XP_010818152.1  protein transport protein Sec31B isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M1L0
      Conserved Domains (4) summary
      COG2319
      Location:33 → 337
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 331
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:570 → 650
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    6. XM_015460649.3 → XP_015316135.1  protein transport protein Sec31B isoform X4

      UniProtKB/TrEMBL
      A0A3Q1M1L0
      Conserved Domains (4) summary
      COG2319
      Location:31 → 333
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 332
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:556 → 636
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    7. XM_024985556.2 → XP_024841324.1  protein transport protein Sec31B isoform X11

      UniProtKB/TrEMBL
      A0A3Q1M1L0
      Conserved Domains (3) summary
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:14 → 332
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl26464
      Location:593 → 872
      Atrophin-1; Atrophin-1 family

    8. XM_059881808.1 → XP_059737791.1  protein transport protein Sec31B isoform X7

      UniProtKB/TrEMBL
      A0A3Q1M1L0

    9. XM_015460656.3 → XP_015316142.1  protein transport protein Sec31B isoform X10

      UniProtKB/TrEMBL
      E1BLS3
      Conserved Domains (4) summary
      COG2319
      Location:31 → 356
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 332
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:571 → 651
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    10. XM_015460655.3 → XP_015316141.1  protein transport protein Sec31B isoform X9

      UniProtKB/TrEMBL
      A0A3Q1M1L0
      Conserved Domains (4) summary
      COG2319
      Location:31 → 356
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 332
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:571 → 651
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    11. XM_015460650.3 → XP_015316136.1  protein transport protein Sec31B isoform X5

      UniProtKB/TrEMBL
      E1BLS3
      Conserved Domains (4) summary
      COG2319
      Location:31 → 356
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 332
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:571 → 651
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    12. XM_010819848.4 → XP_010818150.1  protein transport protein Sec31B isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M1L0, A0AAA9SFZ0
      Related
      ENSBTAP00000082559.1, ENSBTAT00000116558.1
      Conserved Domains (4) summary
      COG2319
      Location:31 → 356
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:14 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 332
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:571 → 651
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    13. XM_059881809.1 → XP_059737792.1  protein transport protein Sec31B isoform X8

      UniProtKB/TrEMBL
      A0A3Q1M1L0

    14. XM_059881811.1 → XP_059737794.1  protein transport protein Sec31B isoform X13

      UniProtKB/TrEMBL
      A0A3Q1M1L0

    15. XM_059881810.1 → XP_059737793.1  protein transport protein Sec31B isoform X12

      UniProtKB/TrEMBL
      A0A3Q1M1L0
    Nucleotide Protein Strain
    Heading Accession and Version

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