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    RBFOX2 RNA binding fox-1 homolog 2 [ Bos taurus (cattle) ]

    Gene ID: 514951, updated on 6-Jun-2024

    Summary

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    Official Symbol
    RBFOX2provided by VGNC
    Official Full Name
    RNA binding fox-1 homolog 2provided by VGNC
    Primary source
    VGNC:VGNC:33778
    See related
    Ensembl:ENSBTAG00000020125
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    RBM9
    Orthologs
    human mouse all
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    Genomic context

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    See RBFOX2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (73895772..74189001, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene myoglobin Neighboring gene apolipoprotein L6 Neighboring gene zeta-crystallin-like Neighboring gene apolipoprotein L3 Neighboring gene apolipoprotein L3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA binding protein fox-1 homolog 2
    Names
    RNA binding motif protein 9
    RNA binding protein, fox-1 homolog 2
    RNA-binding protein 9
    fox-1 homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205372.2 → NP_001192301.1  RNA binding protein fox-1 homolog 2

      Status: VALIDATED

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      A0A3Q1LPA8
      Related
      ENSBTAP00000058841.2, ENSBTAT00000076517.2
      Conserved Domains (3) summary
      TIGR01645
      Location:164 → 330
      half-pint; poly-U binding splicing factor, half-pint family
      pfam12414
      Location:324 → 421
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:180 → 255
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      73895772..74189001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886356.1 → XP_059742339.1  RNA binding protein fox-1 homolog 2 isoform X8

      UniProtKB/TrEMBL
      A0A3Q1M221

    2. XM_059886364.1 → XP_059742347.1  RNA binding protein fox-1 homolog 2 isoform X20

      UniProtKB/TrEMBL
      A0A3Q1LPA8

    3. XM_059886360.1 → XP_059742343.1  RNA binding protein fox-1 homolog 2 isoform X16

      UniProtKB/TrEMBL
      A0A3Q1M221

    4. XM_059886359.1 → XP_059742342.1  RNA binding protein fox-1 homolog 2 isoform X15

      UniProtKB/TrEMBL
      A0A3Q1M221

    5. XM_024991697.2 → XP_024847465.1  RNA binding protein fox-1 homolog 2 isoform X13

      UniProtKB/TrEMBL
      A0A3Q1M080
      Conserved Domains (2) summary
      cd12407
      Location:180 → 255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:320 → 365
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    6. XM_005206788.3 → XP_005206845.1  RNA binding protein fox-1 homolog 2 isoform X10

      See identical proteins and their annotated locations for XP_005206845.1

      UniProtKB/TrEMBL
      A0A3Q1LPA8
      Conserved Domains (2) summary
      pfam12414
      Location:320 → 417
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:180 → 255
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    7. XM_005206786.3 → XP_005206843.1  RNA binding protein fox-1 homolog 2 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1M221
      Conserved Domains (3) summary
      COG0724
      Location:139 → 264
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12407
      Location:180 → 255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:320 → 377
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    8. XM_059886353.1 → XP_059742336.1  RNA binding protein fox-1 homolog 2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M221

    9. XM_059886363.1 → XP_059742346.1  RNA binding protein fox-1 homolog 2 isoform X19

      UniProtKB/TrEMBL
      A0A3Q1LPA8, A0AAA9SBN1
      Related
      ENSBTAP00000079631.1, ENSBTAT00000114909.1

    10. XM_059886358.1 → XP_059742341.1  RNA binding protein fox-1 homolog 2 isoform X14

      UniProtKB/TrEMBL
      A0A3Q1M221

    11. XM_005206789.3 → XP_005206846.1  RNA binding protein fox-1 homolog 2 isoform X12

      UniProtKB/TrEMBL
      A0A3Q1M080
      Conserved Domains (3) summary
      COG0724
      Location:164 → 265
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12407
      Location:181 → 256
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:321 → 366
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    12. XM_024991696.2 → XP_024847464.1  RNA binding protein fox-1 homolog 2 isoform X7

      UniProtKB/TrEMBL
      A0A3Q1LPA8
      Conserved Domains (2) summary
      pfam12414
      Location:321 → 419
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:181 → 256
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    13. XM_005206787.3 → XP_005206844.1  RNA binding protein fox-1 homolog 2 isoform X9

      UniProtKB/TrEMBL
      A0A3Q1LPA8
      Conserved Domains (2) summary
      pfam12414
      Location:321 → 418
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:181 → 256
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    14. XM_005206785.3 → XP_005206842.1  RNA binding protein fox-1 homolog 2 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M221, A0A3Q1MR30
      Related
      ENSBTAP00000074136.2, ENSBTAT00000070015.2
      Conserved Domains (3) summary
      COG0724
      Location:164 → 265
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12407
      Location:181 → 256
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:321 → 378
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    15. XM_059886357.1 → XP_059742340.1  RNA binding protein fox-1 homolog 2 isoform X11

      UniProtKB/TrEMBL
      A0A3Q1M080

    16. XM_059886354.1 → XP_059742337.1  RNA binding protein fox-1 homolog 2 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LPA8

    17. XM_059886355.1 → XP_059742338.1  RNA binding protein fox-1 homolog 2 isoform X6

      UniProtKB/TrEMBL
      A0A3Q1LPA8

    18. XM_059886352.1 → XP_059742335.1  RNA binding protein fox-1 homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M221

    19. XM_015471162.3 → XP_015326648.1  RNA binding protein fox-1 homolog 2 isoform X23

      UniProtKB/Swiss-Prot
      A6QPR6, Q0V8B8
      Conserved Domains (3) summary
      TIGR01645
      Location:117 → 269
      half-pint; poly-U binding splicing factor, half-pint family
      pfam12414
      Location:273 → 370
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:133 → 208
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    20. XM_059886362.1 → XP_059742345.1  RNA binding protein fox-1 homolog 2 isoform X18

      UniProtKB/TrEMBL
      A0A3Q1M080

    21. XM_024991700.2 → XP_024847468.1  RNA binding protein fox-1 homolog 2 isoform X30

      UniProtKB/TrEMBL
      A0A3Q1M080
      Conserved Domains (3) summary
      cd12407
      Location:134 → 209
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:274 → 319
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl25887
      Location:11 → 205
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    22. XM_059886361.1 → XP_059742344.1  RNA binding protein fox-1 homolog 2 isoform X17

      UniProtKB/TrEMBL
      A0A3Q1M221

    23. XM_059886370.1 → XP_059742353.1  RNA binding protein fox-1 homolog 2 isoform X28

      UniProtKB/TrEMBL
      A0A3Q1M080

    24. XM_024991703.2 → XP_024847471.1  RNA binding protein fox-1 homolog 2 isoform X36

      UniProtKB/TrEMBL
      A0A3Q1MZV1, A0AAA9TCV6
      Related
      ENSBTAP00000073192.2, ENSBTAT00000076941.2
      Conserved Domains (3) summary
      TIGR01645
      Location:92 → 244
      half-pint; poly-U binding splicing factor, half-pint family
      pfam12414
      Location:248 → 345
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:108 → 183
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    25. XM_059886369.1 → XP_059742352.1  RNA binding protein fox-1 homolog 2 isoform X26

      UniProtKB/TrEMBL
      A0A3Q1M221

    26. XM_059886372.1 → XP_059742355.1  RNA binding protein fox-1 homolog 2 isoform X33

      UniProtKB/TrEMBL
      A0A3Q1M221

    27. XM_059886365.1 → XP_059742348.1  RNA binding protein fox-1 homolog 2 isoform X21

      UniProtKB/TrEMBL
      A0A3Q1M221

    28. XM_059886366.1 → XP_059742349.1  RNA binding protein fox-1 homolog 2 isoform X22

      UniProtKB/TrEMBL
      A0A3Q1M080

    29. XM_024991701.1 → XP_024847469.1  RNA binding protein fox-1 homolog 2 isoform X31

      UniProtKB/TrEMBL
      A0AAA9TCV6
      Related
      ENSBTAP00000067418.2, ENSBTAT00000071507.2
      Conserved Domains (3) summary
      cd12407
      Location:112 → 187
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:252 → 349
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl25887
      Location:96 → 248
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    30. XM_024991705.1 → XP_024847473.1  RNA binding protein fox-1 homolog 2 isoform X39

      UniProtKB/TrEMBL
      A0A3Q1M080
      Related
      ENSBTAP00000066608.2, ENSBTAT00000081618.2
      Conserved Domains (2) summary
      cd12407
      Location:111 → 186
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:251 → 296
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    31. XM_024991702.1 → XP_024847470.1  RNA binding protein fox-1 homolog 2 isoform X32

      UniProtKB/TrEMBL
      A0AAA9TCV6
      Related
      ENSBTAP00000095904.1, ENSBTAT00000134197.1
      Conserved Domains (3) summary
      TIGR01645
      Location:95 → 247
      half-pint; poly-U binding splicing factor, half-pint family
      pfam12414
      Location:251 → 348
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:111 → 186
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

    32. XM_024991704.1 → XP_024847472.1  RNA binding protein fox-1 homolog 2 isoform X38

      UniProtKB/TrEMBL
      A0A3Q1M080
      Conserved Domains (2) summary
      cd12407
      Location:112 → 187
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:252 → 297
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    33. XM_059886367.1 → XP_059742350.1  RNA binding protein fox-1 homolog 2 isoform X24

      UniProtKB/TrEMBL
      A0A3Q1M221

    34. XM_059886368.1 → XP_059742351.1  RNA binding protein fox-1 homolog 2 isoform X25

      UniProtKB/TrEMBL
      A0A3Q1M080

    35. XM_024991699.2 → XP_024847467.1  RNA binding protein fox-1 homolog 2 isoform X27

      UniProtKB/TrEMBL
      A0A3Q1M080
      Conserved Domains (2) summary
      cd12407
      Location:111 → 186
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:251 → 308
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    36. XM_059886374.1 → XP_059742357.1  RNA binding protein fox-1 homolog 2 isoform X35

      UniProtKB/TrEMBL
      A0A3Q1M080

    37. XM_059886371.1 → XP_059742354.1  RNA binding protein fox-1 homolog 2 isoform X29

      UniProtKB/TrEMBL
      A0A3Q1LPA8

    38. XM_059886375.1 → XP_059742358.1  RNA binding protein fox-1 homolog 2 isoform X37

      UniProtKB/TrEMBL
      A0A3Q1LPA8

    39. XM_059886373.1 → XP_059742356.1  RNA binding protein fox-1 homolog 2 isoform X34

      UniProtKB/TrEMBL
      A0A3Q1LPA8
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QPR6.2 GenPept UniProtKB/Swiss-Prot:A6QPR6

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