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    YBX2 Y-box binding protein 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 489467, updated on 5-Mar-2024

    Summary

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    Gene symbol
    YBX2
    Gene description
    Y-box binding protein 2
    See related
    Ensembl:ENSCAFG00845020876
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See YBX2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (32349934..32355523, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (32382579..32388168, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (32451166..32456761, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (32315382..32320970, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (32274177..32279765, complement)

    Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene claudin 7 Neighboring gene solute carrier family 2 member 4 Neighboring gene uncharacterized LOC111095872 Neighboring gene eukaryotic translation initiation factor 5A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Y-box-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051809.1 Reference ROS_Cfam_1.0

      Range
      32349934..32355523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038665372.1 → XP_038521300.1  Y-box-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0N580, A0A8C0RXP2, A0A8I3PJ79
      Related
      ENSCAFP00845028840.1, ENSCAFT00845036835.1
      Conserved Domains (1) summary
      pfam00313
      Location:96 → 165
      CSD; 'Cold-shock' DNA-binding domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049265.1 Alternate UMICH_Zoey_3.1

      Range
      32315382..32320970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038475482.1 → XP_038331410.1  Y-box-binding protein 2 isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

      Range
      32274177..32279765 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038600831.1 → XP_038456759.1  Y-box-binding protein 2 isoform X1

      Conserved Domains (1) summary
      pfam00313
      Location:96 → 165
      CSD; 'Cold-shock' DNA-binding domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

      Range
      32451166..32456761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038536649.1 → XP_038392577.1  Y-box-binding protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A8C0RXP2

    2. XM_038536648.1 → XP_038392576.1  Y-box-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0N580, A0A8C0RXP2, A0A8I3PJ79
      Conserved Domains (1) summary
      pfam00313
      Location:96 → 165
      CSD; 'Cold-shock' DNA-binding domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      32382579..32388168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_546585.7 → XP_546585.1  Y-box-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0N580, A0A8C0RXP2, A0A8I3PJ79
      Conserved Domains (1) summary
      pfam00313
      Location:96 → 165
      CSD; 'Cold-shock' DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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