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    CLTRN collectrin, amino acid transport regulator [ Canis lupus familiaris (dog) ]

    Gene ID: 611445, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CLTRNprovided by VGNC
    Official Full Name
    collectrin, amino acid transport regulatorprovided by VGNC
    Primary source
    VGNC:VGNC:47568
    See related
    Ensembl:ENSCAFG00845030739
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    TMEM27
    Orthologs
    human mouse all
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    Genomic context

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    See CLTRN in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (11824506..11859272, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (11770083..11786549, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (11907346..11941809, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (11887674..11922326, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (11881588..11916356, complement)

    Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene BMX non-receptor tyrosine kinase Neighboring gene angiotensin converting enzyme 2 Neighboring gene uncharacterized LOC119868365 Neighboring gene carbonic anhydrase 5B Neighboring gene ribosomal protein L18 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    collectrin
    Names
    transmembrane protein 27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051843.1 Reference ROS_Cfam_1.0

      Range
      11824506..11859272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038449461.1 → XP_038305389.1  collectrin isoform X1

      UniProtKB/TrEMBL
      A0A8C0SKE0, A0A8I3Q594, A0A8I3SCT2
      Related
      ENSCAFP00845042926.1, ENSCAFT00845054598.1
      Conserved Domains (1) summary
      pfam16959
      Location:24 → 171
      Collectrin; Renal amino acid transporter

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049299.1 Alternate UMICH_Zoey_3.1

      Range
      11887674..11922326 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038522885.1 → XP_038378813.1  collectrin isoform X1

      Conserved Domains (1) summary
      pfam16959
      Location:24 → 171
      Collectrin; Renal amino acid transporter

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

      Range
      11881588..11916356 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038651393.1 → XP_038507321.1  collectrin isoform X1

      Conserved Domains (1) summary
      pfam16959
      Location:24 → 171
      Collectrin; Renal amino acid transporter

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

      Range
      11907346..11941809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038586879.1 → XP_038442807.1  collectrin isoform X1

      UniProtKB/TrEMBL
      A0A8C0SKE0, A0A8I3Q594, A0A8I3SCT2
      Conserved Domains (1) summary
      pfam16959
      Location:24 → 171
      Collectrin; Renal amino acid transporter

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      11770083..11786549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038464683.1 → XP_038320611.1  collectrin isoform X2

      Conserved Domains (1) summary
      pfam16959
      Location:1 → 65
      Collectrin; Renal amino acid transporter
    Nucleotide Protein
    Heading Accession and Version

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