U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TMEM39A transmembrane protein 39A [ Canis lupus familiaris (dog) ]

    Gene ID: 478574, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TMEM39Aprovided by VGNC
    Official Full Name
    transmembrane protein 39Aprovided by VGNC
    Primary source
    VGNC:VGNC:47576
    See related
    Ensembl:ENSCAFG00845016497
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TMEM39A in Genome Data Viewer
    Location:
    chromosome: 33
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 33 NC_051837.1 (23321967..23360033, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 33 NC_006615.4 (23115430..23152613, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 33 NC_049254.1 (23729476..23767547, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 33 NC_049293.1 (23124462..23162449, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 33 NC_049774.1 (23161760..23198956, complement)

    Chromosome 33 - NC_051837.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 31 Neighboring gene uncharacterized LOC111093763 Neighboring gene U6 spliceosomal RNA Neighboring gene basic proline-rich protein-like Neighboring gene protein O-glucosyltransferase 1 Neighboring gene translocase of inner mitochondrial membrane domain containing 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of autophagosome maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane protein 39A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051837.1 Reference ROS_Cfam_1.0

      Range
      23321967..23360033 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038445050.1 → XP_038300978.1  transmembrane protein 39A isoform X1

      UniProtKB/TrEMBL
      A0A8C0MRF4
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    2. XM_038445049.1 → XP_038300977.1  transmembrane protein 39A isoform X1

      UniProtKB/TrEMBL
      A0A8C0MRF4
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    3. XM_038445048.1 → XP_038300976.1  transmembrane protein 39A isoform X1

      UniProtKB/TrEMBL
      A0A8C0MRF4
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    4. XM_038445051.1 → XP_038300979.1  transmembrane protein 39A isoform X2

      UniProtKB/TrEMBL
      A0A8C0K063, A0A8C0MN71, A0A8C0MRF4, A0A8I3NPL2
      Related
      ENSCAFP00845023020.1, ENSCAFT00845029271.1
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 477
      Tmp39; Putative transmembrane protein

    RNA

    1. XR_005306392.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049293.1 Alternate UMICH_Zoey_3.1

      Range
      23124462..23162449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038519308.1 → XP_038375236.1  transmembrane protein 39A isoform X1

      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    2. XM_038519307.1 → XP_038375235.1  transmembrane protein 39A isoform X1

      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    3. XM_038519309.1 → XP_038375237.1  transmembrane protein 39A isoform X2

      Conserved Domains (1) summary
      pfam10271
      Location:42 → 477
      Tmp39; Putative transmembrane protein

    RNA

    1. XR_005349454.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049774.1 Alternate UNSW_CanFamBas_1.0

      Range
      23161760..23198956 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038647316.1 → XP_038503244.1  transmembrane protein 39A isoform X1

      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    2. XM_038647315.1 → XP_038503243.1  transmembrane protein 39A isoform X1

      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    3. XM_038647314.1 → XP_038503242.1  transmembrane protein 39A isoform X1

      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    4. XM_038647317.1 → XP_038503245.1  transmembrane protein 39A isoform X2

      Conserved Domains (1) summary
      pfam10271
      Location:42 → 477
      Tmp39; Putative transmembrane protein

    RNA

    1. XR_005417044.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049254.1 Alternate UU_Cfam_GSD_1.0

      Range
      23729476..23767547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038582928.1 → XP_038438856.1  transmembrane protein 39A isoform X1

      UniProtKB/TrEMBL
      A0A8C0MRF4
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    2. XM_038582927.1 → XP_038438855.1  transmembrane protein 39A isoform X1

      UniProtKB/TrEMBL
      A0A8C0MRF4
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    3. XM_038582929.1 → XP_038438857.1  transmembrane protein 39A isoform X2

      UniProtKB/TrEMBL
      A0A8C0K063, A0A8C0MN71, A0A8C0MRF4, A0A8I3NPL2
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 477
      Tmp39; Putative transmembrane protein

    RNA

    1. XR_005383365.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006615.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      23115430..23152613 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022413978.2 → XP_022269686.1  transmembrane protein 39A isoform X1

      UniProtKB/TrEMBL
      A0A8C0MRF4
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    2. XM_535749.7 → XP_535749.3  transmembrane protein 39A isoform X2

      UniProtKB/TrEMBL
      A0A8C0K063, A0A8C0MN71, A0A8C0MRF4, A0A8I3NPL2
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 477
      Tmp39; Putative transmembrane protein

    3. XM_022413979.2 → XP_022269687.1  transmembrane protein 39A isoform X1

      UniProtKB/TrEMBL
      A0A8C0MRF4
      Conserved Domains (1) summary
      pfam10271
      Location:42 → 546
      Tmp39; Putative transmembrane protein

    RNA

    1. XR_002622373.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous