SLC13A3 solute carrier family 13 member 3 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: SLC13A3provided by VGNC
Official Full Name: solute carrier family 13 member 3provided by VGNC
Primary source: VGNC:VGNC:46229
See related: Ensembl:ENSCAFG00845019431
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 24

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	24	NC_051828.1 (34518068..34593024, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	24	NC_006606.4 (33269702..33344444, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	24	NC_049245.1 (34430790..34505677, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	24	NC_049284.1 (33775187..33849803, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	24	NC_049765.1 (33891902..33966700, complement)

Chromosome 24 - NC_051828.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables citrate transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed
enables sodium:dicarboxylate symporter activity	IEA Inferred from Electronic Annotation more info	PubMed
enables succinate transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in citrate transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in monoatomic anion transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: solute carrier family 13 member 3; LOW QUALITY PROTEIN: solute carrier family 13 member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051828.1 Reference ROS_Cfam_1.0

Range

34518068..34593024 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038434014.1 → XP_038289942.1 solute carrier family 13 member 3 isoform X1

UniProtKB/TrEMBL

A0A8C0QC03, A0A8I3P9M2, A0A8P0SFH8

Related

ENSCAFP00845026885.1, ENSCAFT00845034343.1

Conserved Domains (1) summary

cd01115
Location:42 → 557

SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...
XM_038434015.1 → XP_038289943.1 solute carrier family 13 member 3 isoform X2

UniProtKB/TrEMBL

A0A8C0KPP1

Conserved Domains (1) summary

cd01115
Location:1 → 510

SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...

Alternate UMICH_Zoey_3.1

Genomic

NC_049284.1 Alternate UMICH_Zoey_3.1

Range

33775187..33849803 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038509173.1 → XP_038365101.1 LOW QUALITY PROTEIN: solute carrier family 13 member 3 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049765.1 Alternate UNSW_CanFamBas_1.0

Range

33891902..33966700 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038636779.1 → XP_038492707.1 solute carrier family 13 member 3 isoform X1
XM_038636780.1 → XP_038492708.1 solute carrier family 13 member 3 isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049245.1 Alternate UU_Cfam_GSD_1.0

Range

34430790..34505677 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038572506.1 → XP_038428434.1 solute carrier family 13 member 3 isoform X1

UniProtKB/TrEMBL

A0A8C0QC03, A0A8I3P9M2, A0A8P0SFH8

Conserved Domains (1) summary

cd01115
Location:42 → 557

SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...
XM_038572507.1 → XP_038428435.1 solute carrier family 13 member 3 isoform X2

UniProtKB/TrEMBL

A0A8C0KPP1

Conserved Domains (1) summary

cd01115
Location:1 → 510

SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006606.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

33269702..33344444 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_543034.6 → XP_543034.2 solute carrier family 13 member 3 isoform X1

UniProtKB/TrEMBL

A0A8C0QC03, A0A8I3P9M2, A0A8P0SFH8

Conserved Domains (1) summary

cd01115
Location:42 → 557

SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...
XM_022408841.2 → XP_022264549.1 solute carrier family 13 member 3 isoform X2

UniProtKB/TrEMBL

A0A8C0KPP1

Conserved Domains (1) summary

cd01115
Location:1 → 510

SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...