U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ATRIP ATR interacting protein [ Canis lupus familiaris (dog) ]

    Gene ID: 608504, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ATRIPprovided by VGNC
    Official Full Name
    ATR interacting proteinprovided by VGNC
    Primary source
    VGNC:VGNC:49885
    See related
    Ensembl:ENSCAFG00845006308
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 20
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (41112221..41128057, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (40544311..40560150, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (41034936..41050787, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (40349655..40365496, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (40754240..40770084, complement)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 Neighboring gene shisa family member 5 Neighboring gene three prime repair exonuclease 1 Neighboring gene uncharacterized LOC609068 Neighboring gene coiled-coil domain containing 51 Neighboring gene plexin B1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA damage checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ATR-interacting protein; LOW QUALITY PROTEIN: ATR-interacting protein
    XP_005632647.1
    XP_022262474.1
    XP_022262475.1
    XP_038283791.1
    XP_038283792.1
    XP_038283793.1
    XP_038359458.1
    XP_038359459.1
    XP_038359460.1
    XP_038422471.1
    XP_038486616.1
    XP_038486617.1
    XP_038486618.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      41112221..41128057 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038427865.1 → XP_038283793.1  ATR-interacting protein isoform X3

      Conserved Domains (1) summary
      pfam03938
      Location:121 → 206
      OmpH; Outer membrane protein (OmpH-like)

    2. XM_038427864.1 → XP_038283792.1  ATR-interacting protein isoform X2

      UniProtKB/TrEMBL
      A0A8C0L819
      Conserved Domains (1) summary
      pfam12718
      Location:112 → 209
      Tropomyosin_1; Tropomyosin like

    3. XM_038427863.1 → XP_038283791.1  ATR-interacting protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0L819, A0A8C0RQ88, A0A8I3MUN3
      Related
      ENSCAFP00845008779.1, ENSCAFT00845011254.1
      Conserved Domains (1) summary
      pfam12718
      Location:112 → 209
      Tropomyosin_1; Tropomyosin like

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      40349655..40365496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038503532.1 → XP_038359460.1  ATR-interacting protein isoform X3

      Conserved Domains (1) summary
      pfam03938
      Location:121 → 206
      OmpH; Outer membrane protein (OmpH-like)

    2. XM_038503531.1 → XP_038359459.1  ATR-interacting protein isoform X2

      Conserved Domains (1) summary
      pfam12718
      Location:112 → 209
      Tropomyosin_1; Tropomyosin like

    3. XM_038503530.1 → XP_038359458.1  ATR-interacting protein isoform X1

      Conserved Domains (1) summary
      pfam12718
      Location:112 → 209
      Tropomyosin_1; Tropomyosin like

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      40754240..40770084 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038630690.1 → XP_038486618.1  ATR-interacting protein isoform X3

      Conserved Domains (1) summary
      pfam03938
      Location:121 → 206
      OmpH; Outer membrane protein (OmpH-like)

    2. XM_038630689.1 → XP_038486617.1  ATR-interacting protein isoform X2

      Conserved Domains (1) summary
      pfam12718
      Location:112 → 209
      Tropomyosin_1; Tropomyosin like

    3. XM_038630688.1 → XP_038486616.1  ATR-interacting protein isoform X1

      Conserved Domains (1) summary
      pfam12718
      Location:112 → 209
      Tropomyosin_1; Tropomyosin like

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      41034936..41050787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038566543.1 → XP_038422471.1  LOW QUALITY PROTEIN: ATR-interacting protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0L819

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      40544311..40560150 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022406767.2 → XP_022262475.1  ATR-interacting protein isoform X3

      Conserved Domains (1) summary
      pfam03938
      Location:121 → 206
      OmpH; Outer membrane protein (OmpH-like)

    2. XM_022406766.2 → XP_022262474.1  ATR-interacting protein isoform X2

      UniProtKB/TrEMBL
      A0A8C0L819
      Conserved Domains (1) summary
      pfam12718
      Location:112 → 209
      Tropomyosin_1; Tropomyosin like

    3. XM_005632590.3 → XP_005632647.1  ATR-interacting protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0L819, A0A8C0TMC1, A0A8P0SHG3
      Conserved Domains (1) summary
      pfam12718
      Location:112 → 209
      Tropomyosin_1; Tropomyosin like
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous