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    FOXA1 forkhead box A1 [ Canis lupus familiaris (dog) ]

    Gene ID: 490657, updated on 5-Mar-2024

    Summary

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    Official Symbol
    FOXA1provided by VGNC
    Official Full Name
    forkhead box A1provided by VGNC
    Primary source
    VGNC:VGNC:53490
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See FOXA1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (16196019..16201769, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (15876271..15882016, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (16245465..16251213, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (15890156..15895900, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (15954899..15960633, complement)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111097004 Neighboring gene uncharacterized LOC119872845 Neighboring gene uncharacterized LOC119872846 Neighboring gene tetratricopeptide repeat domain 6 Neighboring gene prefoldin subunit 1 pseudogene Neighboring gene transfer RNA asparagine (anticodon GUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 3-alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      16196019..16201769 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038673479.1 → XP_038529407.1  hepatocyte nuclear factor 3-alpha

      UniProtKB/TrEMBL
      A0A8C0M0J9, A0A8I3MR68
      Conserved Domains (3) summary
      pfam08430
      Location:17 → 169
      Forkhead_N; Forkhead N-terminal region
      pfam09354
      Location:406 → 469
      HNF_C; HNF3 C-terminal domain
      cd20038
      Location:157 → 268
      FH_FOXA1; Forkhead (FH) domain found in Forkhead box protein A1 (FOXA1) and similar proteins

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      15890156..15895900 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038483099.1 → XP_038339027.1  hepatocyte nuclear factor 3-alpha

      Conserved Domains (3) summary
      pfam08430
      Location:17 → 169
      Forkhead_N; Forkhead N-terminal region
      pfam09354
      Location:405 → 468
      HNF_C; HNF3 C-terminal domain
      cd20038
      Location:157 → 268
      FH_FOXA1; Forkhead (FH) domain found in Forkhead box protein A1 (FOXA1) and similar proteins

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      15954899..15960633 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038608669.1 → XP_038464597.1  hepatocyte nuclear factor 3-alpha

      Conserved Domains (3) summary
      pfam08430
      Location:17 → 169
      Forkhead_N; Forkhead N-terminal region
      pfam09354
      Location:405 → 468
      HNF_C; HNF3 C-terminal domain
      cd20038
      Location:157 → 268
      FH_FOXA1; Forkhead (FH) domain found in Forkhead box protein A1 (FOXA1) and similar proteins

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      16245465..16251213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038544550.1 → XP_038400478.1  hepatocyte nuclear factor 3-alpha

      UniProtKB/TrEMBL
      A0A8C0M0J9, A0A8I3MR68
      Conserved Domains (3) summary
      pfam08430
      Location:17 → 169
      Forkhead_N; Forkhead N-terminal region
      pfam09354
      Location:406 → 469
      HNF_C; HNF3 C-terminal domain
      cd20038
      Location:157 → 268
      FH_FOXA1; Forkhead (FH) domain found in Forkhead box protein A1 (FOXA1) and similar proteins

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      15876271..15882016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_847261.5 → XP_852354.3  hepatocyte nuclear factor 3-alpha

      UniProtKB/TrEMBL
      A0A8C0LDP2, A0A8C0PJM7, A0A8P0NFQ0
      Conserved Domains (3) summary
      pfam08430
      Location:17 → 169
      Forkhead_N; Forkhead N-terminal region
      pfam09354
      Location:405 → 468
      HNF_C; HNF3 C-terminal domain
      cd20038
      Location:157 → 268
      FH_FOXA1; Forkhead (FH) domain found in Forkhead box protein A1 (FOXA1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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