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    CHORDC1 cysteine and histidine rich domain containing 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 476773, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CHORDC1provided by VGNC
    Official Full Name
    cysteine and histidine rich domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:39226
    See related
    Ensembl:ENSCAFG00845024317
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 21
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (10311656..10333767)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (10026591..10048553)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (10215497..10237595)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (10106512..10128579)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (10165450..10187312)

    Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase-like Neighboring gene uncharacterized LOC111091492 Neighboring gene uncharacterized LOC119864952 Neighboring gene N-acetylated alpha-linked acidic dipeptidase 2 Neighboring gene uncharacterized LOC119864954 Neighboring gene tripartite motif-containing protein 43-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in centrosome duplication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine and histidine-rich domain-containing protein 1
    Names
    cysteine and histidine-rich domain (CHORD)-containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051825.1 Reference ROS_Cfam_1.0

      Range
      10311656..10333767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038429805.1 → XP_038285733.1  cysteine and histidine-rich domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8C0T6P4, A0A8C0TAH5, A0A8I3PLN3, A0A8P0T1D9
      Related
      ENSCAFP00845033808.1, ENSCAFT00845043122.1
      Conserved Domains (2) summary
      cd06488
      Location:230 → 316
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:3 → 64
      CHORD

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049281.1 Alternate UMICH_Zoey_3.1

      Range
      10106512..10128579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038505204.1 → XP_038361132.1  cysteine and histidine-rich domain-containing protein 1

      Conserved Domains (2) summary
      cd06488
      Location:230 → 316
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:3 → 64
      CHORD

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

      Range
      10165450..10187312
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038632480.1 → XP_038488408.1  cysteine and histidine-rich domain-containing protein 1

      Conserved Domains (2) summary
      cd06488
      Location:230 → 316
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:3 → 64
      CHORD

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

      Range
      10215497..10237595
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038568348.1 → XP_038424276.1  cysteine and histidine-rich domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8C0T6P4, A0A8C0TAH5, A0A8I3PLN3, A0A8P0T1D9
      Conserved Domains (2) summary
      cd06488
      Location:230 → 316
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:3 → 64
      CHORD

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      10026591..10048553
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_533979.7 → XP_533979.3  cysteine and histidine-rich domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8C0T6P4, A0A8C0TAH5, A0A8I3PLN3, A0A8P0T1D9
      Conserved Domains (2) summary
      cd06488
      Location:230 → 316
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:3 → 64
      CHORD
    Nucleotide Protein
    Heading Accession and Version

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