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    gcnt4b.2 glucosaminyl (N-acetyl) transferase 4b, tandem duplicate 2 [ Danio rerio (zebrafish) ]

    Gene ID: 492587, updated on 25-Apr-2024

    Summary

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    Official Symbol
    gcnt4b.2provided by ZNC
    Official Full Name
    glucosaminyl (N-acetyl) transferase 4b, tandem duplicate 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041111-161
    See related
    Ensembl:ENSDARG00000044755 AllianceGenome:ZFIN:ZDB-GENE-041111-161
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7142583; si:dkeyp-87d8.8
    Summary
    Predicted to enable acetylglucosaminyltransferase activity. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human GCNT4 (glucosaminyl (N-acetyl) transferase 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See gcnt4b.2 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (15832934..15841287)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (15737053..15745529)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type A Neighboring gene gonadotropin-releasing hormone 2 Neighboring gene glucosaminyl (N-acetyl) transferase 4b, tandem duplicate 1 Neighboring gene family with sequence similarity 169 member Ab

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables acetylglucosaminyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4; uncharacterized protein LOC492587

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      15832934..15841287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005161220.4 → XP_005161277.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

      See identical proteins and their annotated locations for XP_005161277.1

      UniProtKB/TrEMBL
      A0A2R9YJP5, A0A8M2B870
      Conserved Domains (1) summary
      pfam02485
      Location:116 → 383
      Branch; Core-2/I-Branching enzyme

    2. XM_005161219.4 → XP_005161276.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

      See identical proteins and their annotated locations for XP_005161276.1

      UniProtKB/TrEMBL
      A0A2R9YJP5, A0A8M2B870
      Related
      ENSDARP00000125831.1, ENSDART00000151161.2
      Conserved Domains (1) summary
      pfam02485
      Location:116 → 383
      Branch; Core-2/I-Branching enzyme

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395082.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      135173..143488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473406.1 → XP_021329081.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

      UniProtKB/TrEMBL
      A0A8M9Q781
      Conserved Domains (1) summary
      cl27418
      Location:116 → 383
      Branch; Core-2/I-Branching enzyme

    2. XM_021473405.1 → XP_021329080.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

      UniProtKB/TrEMBL
      A0A8M9Q781
      Conserved Domains (1) summary
      cl27418
      Location:116 → 383
      Branch; Core-2/I-Branching enzyme
    Nucleotide Protein Strain
    Heading Accession and Version

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