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    TBX5 T-box transcription factor 5 [ Trachemys scripta elegans ]

    Gene ID: 117888048, updated on 19-Mar-2024

    Summary

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    Gene symbol
    TBX5
    Gene description
    T-box transcription factor 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trachemys scripta elegans (sub-species: elegans)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 15
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current CAS_Tse_1.0 (GCF_013100865.1) 15 NC_048312.1 (25658845..25703502)

    Chromosome 15 - NC_048312.1Genomic Context describing neighboring genes Neighboring gene T-box transcription factor 3 Neighboring gene uncharacterized LOC117888049 Neighboring gene maestro heat-like repeat-containing protein family member 1 Neighboring gene RNA binding motif protein 19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048312.1 Chromosome 15 Reference CAS_Tse_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cardiac left ventricle formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pattern specification process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-box transcription factor TBX5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAS_Tse_1.0 Primary Assembly

    Genomic

    1. NC_048312.1 Reference CAS_Tse_1.0 Primary Assembly

      Range
      25658845..25703502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034791082.1 → XP_034646973.1  T-box transcription factor TBX5 isoform X1

    2. XM_034791083.1 → XP_034646974.1  T-box transcription factor TBX5 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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