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    LOC100004523 reticulon-4 receptor-like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 100004523, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC100004523
    Gene description
    reticulon-4 receptor-like 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC100004523 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (35735449..35962201)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (35791721..36018967)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene microRNA mir-2184 Neighboring gene OVCA2 serine hydrolase domain containing Neighboring gene high mobility group box 1a Neighboring gene katanin p60 subunit A-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    reticulon-4 receptor-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      35735449..35962201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017358076.2 → XP_017213565.1  reticulon-4 receptor-like 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z0U5

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394794.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      93161..158974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472355.1 → XP_021328030.1  reticulon-4 receptor-like 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M9Q3H6
      Conserved Domains (3) summary
      TIGR00864
      Location:272 → 337
      PCC; polycystin cation channel protein
      sd00033
      Location:101 → 121
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:218 → 277
      LRR_8; Leucine rich repeat
    Nucleotide Protein Strain
    Heading Accession and Version

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