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    SNRPF small nuclear ribonucleoprotein polypeptide F [ Canis lupus familiaris (dog) ]

    Gene ID: 482609, updated on 5-Mar-2024

    Summary

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    Gene symbol
    SNRPF
    Gene description
    small nuclear ribonucleoprotein polypeptide F
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SNRPF in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (36356099..36363772)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (36077729..36085397)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (35986761..35994428)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (35628828..35636491)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (35723194..35730847)

    Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene netrin 4 Neighboring gene aspartate aminotransferase, mitochondrial-like Neighboring gene uncharacterized LOC111090045 Neighboring gene coiled-coil domain containing 38 Neighboring gene amidohydrolase domain containing 1 Neighboring gene histidine ammonia-lyase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small nuclear ribonucleoprotein F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051819.1 Reference ROS_Cfam_1.0

      Range
      36356099..36363772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038688804.1 → XP_038544732.1  small nuclear ribonucleoprotein F

      UniProtKB/TrEMBL
      A0A8C0LGG1
      Conserved Domains (1) summary
      cd01722
      Location:192 → 260
      Sm_F; Sm protein F

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049275.1 Alternate UMICH_Zoey_3.1

      Range
      35628828..35636491
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038496870.1 → XP_038352798.1  small nuclear ribonucleoprotein F

      Conserved Domains (1) summary
      cd01722
      Location:192 → 260
      Sm_F; Sm protein F

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

      Range
      35723194..35730847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038623121.1 → XP_038479049.1  small nuclear ribonucleoprotein F

      Conserved Domains (1) summary
      cd01722
      Location:192 → 260
      Sm_F; Sm protein F

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

      Range
      35986761..35994428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038559170.1 → XP_038415098.1  small nuclear ribonucleoprotein F

      UniProtKB/TrEMBL
      A0A8C0LGG1
      Conserved Domains (1) summary
      cd01722
      Location:192 → 260
      Sm_F; Sm protein F

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      36077729..36085397
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022427684.2 → XP_022283392.1  small nuclear ribonucleoprotein F

      UniProtKB/TrEMBL
      A0A8C0LGG1
      Conserved Domains (1) summary
      cd01722
      Location:192 → 260
      Sm_F; Sm protein F
    Nucleotide Protein
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