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    slco1b3 solute carrier organic anion transporter family member 1B3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 613085, updated on 11-Nov-2023

    Summary

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    Official Symbol
    slco1b3provided by Xenbase
    Official Full Name
    solute carrier organic anion transporter family member 1B3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5943217
    See related
    Ensembl:ENSXETG00000012089
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    lst3; oatp8; oatp1b3; slc21a8; lst-3tm13
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    Genomic context

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    See slco1b3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (975097..993651)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684156.1 (4145..11736, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 3A Neighboring gene solute carrier organic anion transporter family member 1C1 Neighboring gene solute carrier organic anion transporter family member 1A2 Neighboring gene cytidine monophosphate N-acetylneuraminic acid synthetase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC108027

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier organic anion transporter family member 1B3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001032322.1 → NP_001027493.1  solute carrier organic anion transporter family member 1B3

      See identical proteins and their annotated locations for NP_001027493.1

      Status: PROVISIONAL

      Source sequence(s)
      BC096506
      UniProtKB/TrEMBL
      A0A1B8XW09, Q4VA80
      Conserved Domains (1) summary
      pfam03137
      Location:28 → 604
      OATP; Organic Anion Transporter Polypeptide (OATP) family

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      975097..993651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031897985.1 → XP_031753845.1  solute carrier organic anion transporter family member 1B3 isoform X1

      UniProtKB/TrEMBL
      A0A1B8XW09, F7B8B6
      Related
      ENSXETP00000026397.5, ENSXETT00000026397.5
      Conserved Domains (1) summary
      cd17457
      Location:40 → 558
      MFS_SLCO1B_OATP1B; Solute carrier organic anion transporter 1B subfamily of the Major Facilitator Superfamily of transporters
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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