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Platform GPL11062 Query DataSets for GPL11062
Status Public on May 18, 2012
Title Mouse MEEBO 35K array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mus musculus
Manufacturer Stanford Functional Genomics Facility
Manufacture protocol The Mouse Exonic Evidence Based Oligonucleotide (MEEBO) array was developed by a group of researchers from Stanford and UCSF with collaborators from Rockefeller, Basel, and the Stowers Institute. The oligonucleotide set consists of 38,784 70mer probes that were designed using a transcriptome-based annotation of exonic structure for genomic loci. See http://www.microarray.org/sfgf/meebo.do for more information.
 
 
Submission date Oct 15, 2010
Last update date Jan 18, 2013
Contact name Laurie Littlepage
E-mail(s) laurie.littlepage@ucsf.edu
Phone 415-476-4758
Organization name University of California, San Francisco
Department Anatomy
Lab Zena Werb
Street address 513 Parnassus Avenue, Box 0452
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Samples (12) GSM609042, GSM609046, GSM609074, GSM609076, GSM609077, GSM609078 
Series (2)
GSE24727 The transcription factor ZNF217 is a prognostic biomarker and therapeutic target during breast cancer progression
GSE38047 ZNF217 is an oncogene that promotes a basal phenotype and expansion of a progenitor cell population during breast cancer progression

Data table header descriptions
ID
SEQUENCE Sequences of the oligonucleotide probes
ORF Gene Symbol
GB_ACC GenBank accession number
SPOT_ID

Data table
ID SEQUENCE ORF GB_ACC SPOT_ID
mSQ036120 GAGTTGGGTCTTTCTCTTCCTCCTGTCATTAACTTCAGGTGTCCACAGCCAGGTCCAGCTGCAGCAATCT --unknown
mSQ001932 CTCCTCCTGAATGAGAGCTGCCAGCACGTCACCTTGTCAACATGTCTACTACAGGAACACTTACTTTGAG XM_130317
mSQ003288 TTCCTGTGAGCACCCCCAGCATCTGCCTAGGAGACTCCAGAGTCAGGGGCATGTCCTCCTCTTCTGTAAG Oas1d NM_133893
mSQ004716 GTGGACCATTCTCATCTCAATGACAAAACCTTCAGTCTTTACTGAGGAGCGCATGCTTGCAGGACAGATG 4930415O20Rik XM_128114
mSQ006072 AAACTAAAACAGGTCTATCACCTCCCCTAGACACCTTTGAGACCAGAGATGGCCACCGGAGGATGTTGGA A930031H19Rik
mSQ007500 CAGGATGTCATGTCGTCGTCGAGTAACTCGATTCTGCAGTACTTCAGAGGACGAAATGTCCATGGAGAAC Brwd1 NM_145125
mSQ008856 CACACACAACTAGAATGAATATCCCTTTGTTCACTGCTTTTTTTCCCGTAAGGCAGCTGTTTGGTAAATA Aak1
mSQ010284 GGAAGTGTCTCACAGCTTATTAAGTGTCAATCTATCAGACCTTTGTTTTAATGATTACAATTTCATGAAG 4930521E06Rik
mSQ011256 GTGGGATAGCCTTCTGAAGTAATCATCCTTTTCAAATGTATGGAATAACTCATAATGAAGTAGAACCATG 2810426N06Rik NM_023363
mSQ012684 TTGCCCCAGCTACTGGGATCTCTTAACCCAACTATGGATTTGAAGTGGCTACAATCCAGCTCACATCTTC 4930404H24Rik
mSQ014040 TATTTTGTTTATCTACTCCATAAGATATCTTATTCTTATCTATTCTAAATAATTATTTTTAGTTCTAAAA A130012E19Rik
mSQ016440 AGCATTGGCGACTGCTGGCTCTGTCGCCTCAGCAGAATGGATGCAAGTCGTGCCTTGTGGATTGCCAGAA Arhgap17 NM_144529
mSQ017868 GCTAACTTGGGGACTTATTTCAGGGACTTATTATCTCTGTGCTTGATTTCATTGACTCTGGCCATCAGAA 4933432G23Rik
mSQ019224 ACTACTGCTTGAAGAGAAAACCAATGAGAAATATGAAAAATTCAAAGCCATCGAGTATAAAGTTCAAGTC Stfa2l1 NM_173869
mSQ020652 GTAATTAGCATTGTATTCTTGGTCTAGGAAAGTAAATTCCTACAGCAGTACTATTAAAGATTAAAATCTA Rab9 NM_019773
mSQ021624 CATGGGAAAACCACTATTGTACAATAGTGATCTAAAATAGCTCCTTTGAGCAGGCAAAAGGATCAAGTTG Crot NM_023733
mSQ023052 ATGTTAGTGTGAGACATAACAGAGAGGGCATCGCTTTGAGAGTAGGGTCGCATCTGAGAAGTCCTTGTCT Srprb NM_009275
mSQ024408 TCATAAACGTAGGTTCCTCTTACATGCCTTTTAAGTATGGTGTTTGACATTAACTTGTGAAAAGTCTGTG XM_134612
mSQ026808 GCAGTTGTGTCAGTATAAAGAAGAAGCGTAGACTTGAGGACTTACTCATAGTGATATCCGATAGCGATGG D330018D10Rik
mSQ028236 GTCTCTTCTCTCCAGCTGACTAAACATTTTTCTGTACCAGTTAATTTTTCCAACTAATAGAATAAAGGCA Rhoa NM_016802

Total number of rows: 34968

Table truncated, full table size 3318 Kbytes.




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