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Platform GPL13816 Query DataSets for GPL13816
Status Public on Jul 05, 2011
Title Agilent-025553 Spym49N131_01 Custom Array GE 8x15K (Probe Name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Streptococcus pyogenes NZ131
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Custom Array GE 8x15K; Agilent [025553_D_GEO_20090929.txt]
 
Submission date Jul 03, 2011
Last update date Jul 05, 2011
Contact name Nikolai Siemens
E-mail(s) nikolai.siemens@uni-rostock.de
Phone 00493814945939
Organization name University of Rostock
Department IMIKRO
Lab Kreikemeyer
Street address Schillingallee 70
City Rostock
State/province MV
ZIP/Postal code 18057
Country Germany
 
Samples (16) GSM754270, GSM754271, GSM754272, GSM754273, GSM754274, GSM754275 
Series (1)
GSE30397 GAS M49: wild type vs Δralp3 mutant
Relations
Alternative to GPL13796

Data table header descriptions
ID Agilent probe name
GeneSymbol
Description
Chromosome End Index_Avadis_
Chromosome Start Index_Avadis_
Chromosome Strand_Avadis_
EntrezGeneID
ORF Locus tag
protein_accession.version
PrimaryAccession
GeneID
SEQUENCE
SPOT_ID

Data table
ID GeneSymbol Description Chromosome End Index_Avadis_ Chromosome Start Index_Avadis_ Chromosome Strand_Avadis_ EntrezGeneID ORF protein_accession.version PrimaryAccession GeneID SEQUENCE SPOT_ID
GE_BrightCorner GE_BrightCorner GE_BrightCorner
DarkCorner DarkCorner DarkCorner
CUST_2873_PI419771994 Spy49_0564c Transposase 562854 562279 6985578 Spy49_0564c YP_002285585.1 YP_002285585.1 6985578 TTCCATGTAATAGCTTTGTACTGGAGCTAGCTGACAAAGCATTGTCAGCTATCATCCGTC
CUST_5329_PI419771994 malR Putative maltose operon transcriptional repressor 1025852 1024833 6986022 Spy49_1027c YP_002286022.1 YP_002286022.1 6986022 TCTCTTGATGACCTGATAGAGCAAGTGAAACTGATGGATCTTCAAAAACGAGTTGATGGT
CUST_1385_PI419771994 htpX heat shock protein HtpX 292520 291624 + 6985062 Spy49_0277 YP_002285310.1 YP_002285310.1 6985062 ATATGGCTATGGTGGCCCAGATTCCGATGCCGAGAGTTTTTATTATTGAAGATCCTTCTT
CUST_4354_PI419771994 Spy49_0850c Polysaccharide deacetylase family protein 850619 849657 6985852 Spy49_0850c YP_002285853.1 YP_002285853.1 6985852 CAGGACTAACCGAAATGGGAAGCGCTACCAATCTGACTCTTAAGCAGATGAAAGAAATGA
CUST_8763_PI419771994 Spy49_1709 Putative ribosomal large subunit pseudouridine synthase 1694595 1693594 + 6985395 Spy49_1709 YP_002286657.1 YP_002286657.1 6985395 GATGGGGCAGGCCGAAAAAGTAACCTGCCTTTATGAAGATGAGCACATCATTATTGTTAA
CUST_8116_PI419771994 salB Putative salivaricin A modification enzyme, amino acid dehydration 1562866 1561241 6985112 Spy49_1582c YP_002286535.1 YP_002286535.1 6985112 TGAAGGGATTACTGTAGACACCTATCATAGAATTTATGAGACATCACTTTCAAACGGTTT
CUST_3989_PI419771994 Spy49_0779 Conserved phage protein 773285 772686 + 6985786 Spy49_0779 YP_002285787.1 YP_002285787.1 6985786 TATTGATTTGACAACGTACTTTGTACCGACAGATCCATCTGTTGCTGTCATCGAGGAAGC
CUST_9125_PI419771994 Spy49_1781 hypothetical protein 1770806 1770480 + 6985462 Spy49_1781 YP_002286723.1 YP_002286723.1 6985462 TCGGCTACCTTGATTGAATTTCTGATTTTAGCCATTGTCGAAAAAAATGATTCTTACGGT
CUST_10_PI419771994 dnaN DNA polymerase III subunit beta 2877 1741 + 6984517 Spy49_0002 YP_002285061.1 YP_002285061.1 6984517 TGCTGAAACAGCTTTTGCAGCCAGTTTACAAGAAAGTCGTCCTATTTTAACAGGAGTTCA
CUST_4225_PI419771994 Spy49_0825 Lipoyl-binding domain protein 826184 825315 + 6985828 Spy49_0825 YP_002285829.1 YP_002285829.1 6985828 CCTGGTCAGAAACAGTCAAATCGCAGGTTTGGACGACGATTATTGCTCAAAAGATTTTGA
CUST_3006_PI419771994 atpC F0F1 ATP synthase subunit epsilon 592169 591753 + 6985602 Spy49_0589 YP_002285609.1 YP_002285609.1 6985602 CAAAACTAAGAGCAGAACGTGAAATTGCACAGGCTGAAACGACCCACAACATTGATGAAG
CUST_7560_PI419771994 Spy49_1459c Phage-associated cell wall hydrolase 1465943 1464735 6984916 Spy49_1459c YP_002286426.1 YP_002286426.1 6984916 TTTGTCCAATCAGTGCCGTATCACCAATTTGGACATACGGGAATTGTTATCGAGGATAGT
CUST_1141_PI419771994 rpsG 30S ribosomal protein S7 239857 239387 + 6985013 Spy49_0231 YP_002285267.1 YP_002285267.1 6985013 GACTTCGTTGGTTGGTAAACGCATCACGAGCTCGTGGTGAACACACTATGAAAG
CUST_258_PI419771994 rpsC 30S ribosomal protein S3 68900 68274 + 6984675 Spy49_0053 YP_002285105.1 YP_002285105.1 6984675 AAACAAGCAATCCAACGTACAATGCGTGCAGGAGCTAAAGGGATTAAAACTCAAGTTTCT
CUST_1956_PI419771994 rplK 50S ribosomal protein L11 392725 392300 + 6985330 Spy49_0387 YP_002285418.1 YP_002285418.1 6985330 ACATCATGGGCTTCACTAAAGAATTTAACGCTCGTACAGCTGATCAAGCTGGTATGATCA
CUST_5907_PI419771994 Spy49_1148c hypothetical protein 1141692 1141105 6984383 Spy49_1148c YP_002286131.1 YP_002286131.1 6984383 AACTACAGGTGATCTCTTTTTCAGTGGGAACTCTGCCACTCCCAAAAAAAGATGTTTTGC
CUST_6374_PI419771994 Spy49_1233c Putative sugar-binding transport protein 1231208 1230258 6984467 Spy49_1233c YP_002286214.1 YP_002286214.1 6984467 CAGCTAGCCTTTATCAGTCAGTAGTTGGGACCAGCATCTTGTTAGTCACTAATGCGATTG
CUST_5679_PI419771994 Spy49_1100 Putative chloride channel protein 1098262 1096949 + 6986088 Spy49_1100 YP_002286088.1 YP_002286088.1 6986088 AGCCATTCACCTGATTCAGTCCCTCAGTTTTGGATTCAGTCAAGGTTCTTTTAGCACTAT

Total number of rows: 9397

Table truncated, full table size 1813 Kbytes.




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